Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43560 269 / 5e-91 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G45680 76 / 2e-16 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT4G39710 74 / 2e-15 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) AT3G25230 67 / 2e-12 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G48580 64 / 2e-12 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G25220 63 / 3e-12 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT3G60370 65 / 4e-12 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48570 64 / 2e-11 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G10060 62 / 2e-11 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G05420 60 / 4e-11 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008359 [exp] 390 / 1e-138 AT2G43560 273 / 1e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10006949 [exp] 82 / 1e-18 AT5G45680 244 / 2e-82 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10024735 [exp] 76 / 1e-16 AT5G45680 194 / 1e-63 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10016811 [exp] 74 / 2e-15 AT4G39710 271 / 5e-93 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Lus10022507 [exp] 74 / 2e-15 AT4G39710 270 / 8e-93 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Lus10042897 [exp] 74 / 3e-15 AT3G60370 312 / 8e-109 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10003171 [exp] 74 / 1e-14 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10028194 [exp] 73 / 1e-14 AT3G60370 305 / 2e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10035560 [exp] 68 / 2e-13 AT3G10060 296 / 2e-102 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G134600 [exp] 270 / 2e-91 AT2G43560 286 / 2e-98 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.017G017500 [exp] 270 / 5e-91 AT2G43560 281 / 3e-96 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G149400 [exp] 79 / 3e-16 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G075500 [exp] 75 / 5e-16 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.005G079700 [exp] 74 / 1e-15 AT4G39710 243 / 1e-81 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Potri.012G129200 [exp] 73 / 3e-14 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.002G248300 [exp] 72 / 7e-14 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.014G045600 [exp] 69 / 1e-13 AT3G60370 302 / 3e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G033400 [exp] 69 / 6e-13 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248200 [exp] 63 / 4e-12 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10027115 pacid=23151586 polypeptide=Lus10027115 locus=Lus10027115.g ID=Lus10027115.BGIv1.0 annot-version=v1.0 ATGTCATTATGGAGAGGCTCTTTATCTTCCCACACCTCTTCCACAAACTCTTCATCAACTTCTTCTTCAAATTTTTCTAACTCATCATCATGTAAAATTA GGTTGTCTTCTTGGAAGGGTACTTCCTCCCTTTCAAACTCTTCTAACTTGCCATCCTGGACAGCTAGATTATCTTCAAAGAAAGGTATTCATCCTCAGCG TCATGCTTCTTCCGCTACGGTTCCGTTATTCGCCGGCGGCCGAGTGATTCTACGTTGCTGCTCCACGTCGGAACTCGGAAGCAGCTGCAGACGCGGTCCT TGGACGAGAACCAATGCTCTGGCAACACGTAGGGATATAATTGGGGCGATTATCTTGGGAGCTTCAAGCATCGTGATCGGACCATTTGATGATGCTAGAG GAGCAGGGTTGCCTCCGGAGGACAAGCCCAAGCTCTGCGACGCAACTTGCGAGAAGGAGCTTGAAAACGTGCCCATGGTGAATACAGAATCCGGGTTGCA ATACAAGGATATTAAAGTTGGTGATGGGCCTTCTCCTCCTGTTGGTTTCCAGGTTGCTGCTAATTGTGTTGCCATGGTTCCATCAGGACAAATCTTTGAT AGTTCTTTGGAGAAAGGGCTGCCATATATTTTCCGTGTCGGCTCTGGACAGGTGATCAAGGGGCTTGATGAAGGGATCTTAACAATGAAAGTTGGAGGGA AGCGGCGGCTCTACATTCCTGGGCAGTTGGCGTTTCCGAAAGGTCTGAATTCAGCTCCAGGAAGGCCAAGGGTGGCTCCCAATAGCCCTGTGGTTTTCGA TGTCAGTCTTGAATACATACCAGGTCTTGAGCTGGACCTAGAGTAA
AA sequence Show only first row Show all	>Lus10027115 pacid=23151586 polypeptide=Lus10027115 locus=Lus10027115.g ID=Lus10027115.BGIv1.0 annot-version=v1.0 MSLWRGSLSSHTSSTNSSSTSSSNFSNSSSCKIRLSSWKGTSSLSNSSNLPSWTARLSSKKGIHPQRHASSATVPLFAGGRVILRCCSTSELGSSCRRGP WTRTNALATRRDIIGAIILGASSIVIGPFDDARGAGLPPEDKPKLCDATCEKELENVPMVNTESGLQYKDIKVGDGPSPPVGFQVAANCVAMVPSGQIFD SSLEKGLPYIFRVGSGQVIKGLDEGILTMKVGGKRRLYIPGQLAFPKGLNSAPGRPRVAPNSPVVFDVSLEYIPGLELDLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10027115 [exp]	0	1
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10001966 [exp]	1.0	0.9697
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10023723 [exp]	1.4	0.9611
AT1G54500			Rubredoxin-like superfamily pr...		Lus10019005 [exp]	1.7	0.9581
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10020578 [exp]	2.0	0.9566
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	3.9	0.9563
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	5.7	0.9471
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001634 [exp]	6.7	0.9456
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10028451 [exp]	7.7	0.9510
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10016783 [exp]	8.8	0.9489
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10035119 [exp]	9.5	0.9369

Compare expression of checked genes

Lus10027115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.