Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18250 210 / 6e-63 receptor serine/threonine kinase, putative (.1) AT1G66930 205 / 5e-62 Protein kinase superfamily protein (.1) AT5G38260 204 / 7e-62 Protein kinase superfamily protein (.1) AT1G66910 204 / 9e-62 Protein kinase superfamily protein (.1) AT1G66980 208 / 2e-61 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G38280 204 / 2e-61 PR5K PR5-like receptor kinase (.1) AT5G38250 200 / 1e-60 Protein kinase family protein (.1) AT1G66920 199 / 4e-60 Protein kinase superfamily protein (.1.2) AT5G39030 201 / 8e-60 Protein kinase superfamily protein (.1) AT5G38240 197 / 1e-59 Protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027119 [exp] 436 / 8e-153 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1) Lus10025545 [exp] 362 / 1e-126 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10027085 [exp] 358 / 9e-126 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 371 / 5e-125 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10022359 [exp] 362 / 5e-123 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008362 [exp] 346 / 1e-117 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10027006 [exp] 318 / 2e-108 AT1G66980 218 / 1e-66 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025492 [exp] 318 / 3e-105 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10025549 [exp] 264 / 2e-89 AT1G66980 209 / 1e-62 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G034500 [exp] 289 / 4e-98 AT5G38260 336 / 6e-111 Protein kinase superfamily protein (.1) Potri.015G122000 [exp] 275 / 3e-92 AT5G38280 336 / 2e-110 PR5-like receptor kinase (.1) Potri.007G125450 [exp] 280 / 1e-90 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125200 [exp] 275 / 3e-90 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1) Potri.015G018600 [exp] 278 / 5e-90 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.017G009000 [exp] 267 / 2e-89 AT5G38280 306 / 3e-99 PR5-like receptor kinase (.1) Potri.017G009100 [exp] 276 / 7e-89 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.007G141125 [exp] 277 / 9e-89 AT5G38280 335 / 9e-105 PR5-like receptor kinase (.1) Potri.007G125800 [exp] 276 / 9e-89 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G126100 [exp] 275 / 1e-88 AT1G70250 290 / 3e-87 receptor serine/threonine kinase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10027116 pacid=23151519 polypeptide=Lus10027116 locus=Lus10027116.g ID=Lus10027116.BGIv1.0 annot-version=v1.0 ATGCTTGGAGAAAAGTCCACAGCTGGCGGAGTCCAAGACTTTATTAACGAAGTTGCTACCATTGGAACGATTCACCATGCTAATGTGGTTAGACTTATCG GCTTCTGTTCTGACGGATCGAAGCGTGCTCTCGTTTACGAGTTCATGCCTAATGATTCCCTTGATAAGTACATCTTTCGCAAACAACAAGGACGGGTAGC TTTGAGCATTGAACAACTGTATCACATCTCTATCGGAGTGGCTCGAGGGATTGAATATCTGCATAACAGGTGTGCCATGCAGATTCTGCATTTCGACATC AAGCCCCACAATGTTCTTCTTGATGACAACTTTAACCCGAAATTGTCCGACTTCGGGTTGGCTAGGTTGTATTATGCAGGCGATAGATTTGCAACTGTAA TTGCAGCAAGAGGAACAATAGGGTACATGGCGCCAGAGCTGTTCTACAGGAACATCGGGAGAGTCTCTTACAAAGCTGATGTCTACAGCTTTGGAATGTT GCTGGTACACATGGCAGAGAAAAGGAATAACTTGAATGCTGCAACAGGTCGTTCAAGTCAAGTTTACTTCCCCTTCTGGGTTCATGATCAGATTGTGTCC ACAATTGGAACTCCTATTGTAGTTGGAGATGATGTAACAGAAGAAGAGAATGAGACTGAAAAAGAAGATGGTGATTGTAGGGTTGTGGTGCATCCAGACG AATCCAGACAGTCGCCGTCCAGGTAA
AA sequence Show only first row Show all	>Lus10027116 pacid=23151519 polypeptide=Lus10027116 locus=Lus10027116.g ID=Lus10027116.BGIv1.0 annot-version=v1.0 MLGEKSTAGGVQDFINEVATIGTIHHANVVRLIGFCSDGSKRALVYEFMPNDSLDKYIFRKQQGRVALSIEQLYHISIGVARGIEYLHNRCAMQILHFDI KPHNVLLDDNFNPKLSDFGLARLYYAGDRFATVIAARGTIGYMAPELFYRNIGRVSYKADVYSFGMLLVHMAEKRNNLNAATGRSSQVYFPFWVHDQIVS TIGTPIVVGDDVTEEENETEKEDGDCRVVVHPDESRQSPSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39030			Protein kinase superfamily pro...		Lus10027116 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Lus10027119 [exp]	1.0	0.9347
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10000250 [exp]	1.4	0.9189
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10014077 [exp]	2.2	0.8743
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10040088 [exp]	3.5	0.8718
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10041630 [exp]	4.8	0.8034
AT1G18390			Protein kinase superfamily pro...		Lus10027117 [exp]	5.5	0.8794
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10016748 [exp]	5.5	0.8303
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024891 [exp]	6.9	0.8786
					Lus10038255 [exp]	7.5	0.8601
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10024785 [exp]	9.4	0.7644

Compare expression of checked genes

Lus10027116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.