Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18390 47 / 6e-06 Protein kinase superfamily protein (.1.2) AT1G67025 44 / 3e-05 unknown protein AT2G46495 45 / 4e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027119 [exp] 499 / 5e-177 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1) Lus10008362 [exp] 452 / 4e-159 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10022359 [exp] 270 / 5e-87 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10026760 [exp] 252 / 9e-84 AT1G11915 41 / 4e-04 unknown protein Lus10022368 [exp] 267 / 2e-82 AT2G13600 414 / 2e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025492 [exp] 248 / 1e-77 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10025554 [exp] 239 / 4e-76 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10025546 [exp] 189 / 1e-59 AT2G46495 41 / 5e-04 RING/U-box superfamily protein (.1) Lus10025544 [exp] 194 / 1e-58 AT5G39020 217 / 1e-62 Malectin/receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G125000 [exp] 158 / 3e-44 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.007G126100 [exp] 151 / 2e-41 AT1G70250 290 / 3e-87 receptor serine/threonine kinase, putative (.1) Potri.015G018600 [exp] 148 / 9e-41 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.007G125800 [exp] 145 / 1e-39 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G125450 [exp] 139 / 3e-37 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G141125 [exp] 136 / 4e-36 AT5G38280 335 / 9e-105 PR5-like receptor kinase (.1) Potri.007G117050 [exp] 132 / 1e-34 AT5G38280 338 / 5e-106 PR5-like receptor kinase (.1) Potri.017G009100 [exp] 128 / 2e-33 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G009400 [exp] 128 / 2e-33 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.017G009500 [exp] 127 / 4e-33 AT5G38280 327 / 3e-102 PR5-like receptor kinase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027117 pacid=23151565 polypeptide=Lus10027117 locus=Lus10027117.g ID=Lus10027117.BGIv1.0 annot-version=v1.0 ATGATGGAATCACCATTAATATTCTTGCCGCTGAAGCTACTTCTCCAGATATGCCAAGCTGATCAAGGAAAATGCGAACCTTCGTCTTGTGGGAACATCC GAAACATCAAGTACCCTTTTAGACTCACGACTGATCCCCAAAGCTGTGGAGATCACAACCATAACCTGTTATGTGAGAACAACAGGACGGTTGTGTATCT GAAGAACTCTTCTGCAAAATACTATGTGCAGGCAATCAACTACAGGAACTCGACAATCCGGTTGGTGGATGATGGTGTGGTTGAAGGCAACTGCTCCTCC CTCCCCACTCACCCTTTGTCCGAAAACATCTTCACTTCCCACGATGATCCATACATCGGCATAAGAGTTATAGGGCGGAATCTACTCTTCTTACTTACAT ATGAGCACCTTAATGAAGTCTTGACTCTTGTCAGCTGTCAGAATCCTCATGTTAGTTCTGCAATGTTTATCGAGACGACTCCTTGCATCAACGGATCGAC AAATTCCTCAGCATACAATTATCATGCGGTTATAGCTGGTGGTGGTGCGGATTTATTTAGTTTGCCTAAGGATTGCAAAGTAGAGATGATGAATTTGTTA CCCGGAAGGAAGGATTATTCCCAGCTCTCATTTCAACAAGTTCACCAGGAACTTGAATATGGGTTCGAGCTTACGTGGCACCGTTACAAATCTACGGACT GCTTTGGGTTGAGCGACCGATGCTACCTTGATGGCGGCTACAAAAGGACTCACAATGGTAACTTCATAACATATAACACATCATATCCAATCAGCAGTGC TTTTAACTAA
AA sequence Show only first row Show all	>Lus10027117 pacid=23151565 polypeptide=Lus10027117 locus=Lus10027117.g ID=Lus10027117.BGIv1.0 annot-version=v1.0 MMESPLIFLPLKLLLQICQADQGKCEPSSCGNIRNIKYPFRLTTDPQSCGDHNHNLLCENNRTVVYLKNSSAKYYVQAINYRNSTIRLVDDGVVEGNCSS LPTHPLSENIFTSHDDPYIGIRVIGRNLLFLLTYEHLNEVLTLVSCQNPHVSSAMFIETTPCINGSTNSSAYNYHAVIAGGGADLFSLPKDCKVEMMNLL PGRKDYSQLSFQQVHQELEYGFELTWHRYKSTDCFGLSDRCYLDGGYKRTHNGNFITYNTSYPISSAFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18390			Protein kinase superfamily pro...		Lus10027117 [exp]	0	1
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10040088 [exp]	2.4	0.8854
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10002638 [exp]	4.0	0.9083
					Lus10031873 [exp]	4.2	0.9129
AT5G38260			Protein kinase superfamily pro...		Lus10027119 [exp]	5.2	0.8799
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10024962 [exp]	5.3	0.8691
AT5G39030			Protein kinase superfamily pro...		Lus10027116 [exp]	5.5	0.8794
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10028102 [exp]	6.7	0.9051
AT3G23325			Splicing factor 3B subunit 5/R...		Lus10011813 [exp]	8.8	0.8484
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023021 [exp]	11.0	0.8689
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	11.2	0.8831

Compare expression of checked genes

Lus10027117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.