Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038642 [exp] 186 / 2e-61 ND / Lus10038483 [exp] 100 / 2e-28 ND / Lus10017801 [exp] 102 / 1e-27 ND / Lus10007416 [exp] 80 / 3e-18 ND / Lus10026444 [exp] 77 / 7e-17 ND / Lus10029488 [exp] 76 / 2e-16 ND / Lus10003025 [exp] 71 / 1e-14 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10007415 [exp] 69 / 6e-14 ND / Lus10021668 [exp] 65 / 2e-13 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027118 pacid=23151556 polypeptide=Lus10027118 locus=Lus10027118.g ID=Lus10027118.BGIv1.0 annot-version=v1.0 ATGTTCTTACATGATATTGTGGTGGCTGACCTTTCGGCCGAACTTCAACTCCGTCTCCAACACATTTGGCGGCTCTACAACCCGCCGGAGCCAGAACAAC ATTTTTCCTTGGGTACTCTTTGGACAGACGCCGATGTATGCTTTCAGTGTAGGATACTCGGATTCAGGGCGATACGTTGCGTTATCTCGTCTTCGATTTG GATAAACGCATCTTTGTTGGGGACATTTACAATCTGTCTGGAACACCGCATCGAAGGATACACCGAGCCTGATGATGTCGAGGAGGTCACTAGGCTCATT GTCGAAGGCTCTATTTACAAAATCCACAATCACAATCTTATACGAGCTCGCTCTGCTATGCGCTCGTGTCCAGGAGATTTCTCAATTTTCATTCGCTCTG AAAACCTGCTCCACAAAGTTGAGGAAGACCCTGAACGACCGTTTTCCCCGCATTTGCCTTCAACATAG
AA sequence Show only first row Show all	>Lus10027118 pacid=23151556 polypeptide=Lus10027118 locus=Lus10027118.g ID=Lus10027118.BGIv1.0 annot-version=v1.0 MFLHDIVVADLSAELQLRLQHIWRLYNPPEPEQHFSLGTLWTDADVCFQCRILGFRAIRCVISSSIWINASLLGTFTICLEHRIEGYTEPDDVEEVTRLI VEGSIYKIHNHNLIRARSAMRSCPGDFSIFIRSENLLHKVEEDPERPFSPHLPST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027118 [exp]	0	1
AT5G14490	NAC	ANAC085	NAC domain containing protein ...		Lus10003668 [exp]	8.4	0.7298
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10008010 [exp]	15.7	0.7232
AT5G24280		GMI1	gamma-irradiation and mitomyci...		Lus10022400 [exp]	17.5	0.6655
					Lus10000348 [exp]	21.1	0.6963
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10034317 [exp]	22.4	0.6993
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	23.4	0.7133
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10036670 [exp]	24.2	0.6102
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10009876 [exp]	27.3	0.6944
					Lus10027352 [exp]	32.1	0.6735
AT1G72100			late embryogenesis abundant do...		Lus10000723 [exp]	32.9	0.6845

Compare expression of checked genes

Lus10027118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.