Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38260 205 / 3e-58 Protein kinase superfamily protein (.1) AT4G18250 207 / 4e-58 receptor serine/threonine kinase, putative (.1) AT1G66930 203 / 2e-57 Protein kinase superfamily protein (.1) AT1G66910 201 / 1e-56 Protein kinase superfamily protein (.1) AT5G38280 200 / 2e-56 PR5K PR5-like receptor kinase (.1) AT1G66920 199 / 3e-56 Protein kinase superfamily protein (.1.2) AT1G66980 202 / 1e-55 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G38250 196 / 2e-55 Protein kinase family protein (.1) AT5G39030 199 / 3e-55 Protein kinase superfamily protein (.1) AT1G67000 199 / 8e-55 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008362 [exp] 743 / 0 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10022359 [exp] 597 / 0 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10027117 [exp] 505 / 4e-179 AT1G18390 47 / 8e-06 Protein kinase superfamily protein (.1.2) Lus10027116 [exp] 437 / 5e-153 AT5G39030 209 / 2e-63 Protein kinase superfamily protein (.1) Lus10008335 [exp] 454 / 1e-152 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10027006 [exp] 397 / 2e-134 AT1G66980 218 / 1e-66 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025554 [exp] 392 / 1e-131 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10025544 [exp] 388 / 5e-130 AT5G39020 217 / 1e-62 Malectin/receptor-like protein kinase family protein (.1) Lus10014924 [exp] 365 / 9e-119 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G008600 [exp] 326 / 3e-104 AT5G38260 325 / 9e-103 Protein kinase superfamily protein (.1) Potri.017G034500 [exp] 286 / 3e-92 AT5G38260 336 / 6e-111 Protein kinase superfamily protein (.1) Potri.015G122000 [exp] 274 / 2e-87 AT5G38280 336 / 2e-110 PR5-like receptor kinase (.1) Potri.007G125450 [exp] 276 / 1e-84 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125200 [exp] 270 / 3e-84 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1) Potri.017G009000 [exp] 264 / 6e-84 AT5G38280 306 / 3e-99 PR5-like receptor kinase (.1) Potri.015G018600 [exp] 273 / 8e-84 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.007G141125 [exp] 275 / 1e-83 AT5G38280 335 / 9e-105 PR5-like receptor kinase (.1) Potri.017G007900 [exp] 274 / 1e-83 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.017G009100 [exp] 274 / 2e-83 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10027119 pacid=23151610 polypeptide=Lus10027119 locus=Lus10027119.g ID=Lus10027119.BGIv1.0 annot-version=v1.0 ATGTTGCGTGCCGCACCTCCCTGTGTCGCACCTCCCGGACAAACTGCTTCGTCAGATGTAATTGGTCGTTTAACTGCGGTTACTAGGCCAGTACCTTCAA TTGAACTACTTCTCCAGATATGCCAAGCTGATCAAGGAAAATGCGAACCTTCGTCTTGTGGGAACATCCGAAACATCAAGTACCCTTTTAGACTCACGAC TGATCCCCAAAGCTGTGGAGATCACAACCATAACCTGTTATGTGAGAACAACAGGACGGTTGTGTATCTGAAGAACTCTTCTGCAAAATACTATGTGCAG GCAATCAACTACAGGAACTCGACAATCCGGTTGGTGGATGATGGTGTGGTTGAAGGCAACTGCTCCTCCCTCCCCACTCACCCTTTGTCCGAAAACATCT TCACTTCCCACGATGATCCATACATCGGCATAAGAGTTATAGGGCGGAATCTACTCTTCTTACTTACATATGAGCACCTTAATGAAGTCTTGACTCTTGT CAGCTGTCAGAATCCTCATGTTGGTTCTGCAATGTTTATCGAGACAACTCCTTGCATCAACGGATCGACAAATTCCTCAGCATACAATTATCATGCGGTT ATAGCTGGTGGTGGTGCGGATTTATTTAGTTTGCCTAAGGATTGCAAAGTAGAGATGATGAATTTGTTACCCGGAAGGAAGGATTATTCCCAGCTCTCAT TTCAACAAGTTCACCAGGAACTTGAATATGGGTTCGAGCTTACGTGGCACCGTTACAAATCTACGGACTGCTTTGGGTTGAGCGACCGATGCTACCTTGA TGGCGGCTACAAAAGGACTCACAATGAAACTCATATATATATATATATATATAAACAAACCTCCACAACAATCTGGCTTCAGCCACCTGTTGATAAAAGC TCTTGGGACCCCAGTCGCAATTGCATTTCTGGTATAAAAAGCGGAGTCCAAGACTTTATTAACGAAGTTGCTACCATTGGAACGATTCACCATGCTAATG TGGTTAGACTTATCGGCTTCTGTTCTGACGGATCGAAGCGTGCTCTCGTTTACGAGTTCATGCCTAATGATTCCCTTGATAAGTACATCTTTCGCAAACA ACAAGGACGGGTAGCTTTGAGCATTGAACAACTGTATCACATCTCTATCGGAGTGGCTCGAGGGATTGAATATCTGCATAACAGGTGTGCCATGCAGATT CTGCATTTCGACATCAAGCCCCACAATGTTCTTCTTGATGACAACTTTAACCCGAAATTGTCCGACTTCGGGTTGGCTAGGTTGTATTATGCAGGCGATA GATTTGCAACTGTAATTGCAGCAAGAGGAACAATAGGGTACATGGCGCCAGAGCTGTTCTACAGGAACATCGGGAGAGTCTCTTACAAAGCTGATGTCTA CAGCTTTGGAATGTTGCTGGTACACATGGCAGAGAAAAGGAATAACTTGAATGCTGCAACAGGTCGTTCAAGTCAAGTTTACTTCCCCTTCTGGGTTCAT GATCAGATTGTGTCCACAATTGGAACTCCTATTGTAGTTGGAGATGATGTAACAGAAGAAGAGAATGAGACTGAAAAAGAAGATGGTGATTGTAGGGTTG TGGTGCATCCAGACGAATCCAGACAGTCGCCGTCCAGGTAA
AA sequence Show only first row Show all	>Lus10027119 pacid=23151610 polypeptide=Lus10027119 locus=Lus10027119.g ID=Lus10027119.BGIv1.0 annot-version=v1.0 MLRAAPPCVAPPGQTASSDVIGRLTAVTRPVPSIELLLQICQADQGKCEPSSCGNIRNIKYPFRLTTDPQSCGDHNHNLLCENNRTVVYLKNSSAKYYVQ AINYRNSTIRLVDDGVVEGNCSSLPTHPLSENIFTSHDDPYIGIRVIGRNLLFLLTYEHLNEVLTLVSCQNPHVGSAMFIETTPCINGSTNSSAYNYHAV IAGGGADLFSLPKDCKVEMMNLLPGRKDYSQLSFQQVHQELEYGFELTWHRYKSTDCFGLSDRCYLDGGYKRTHNETHIYIYIYKQTSTTIWLQPPVDKS SWDPSRNCISGIKSGVQDFINEVATIGTIHHANVVRLIGFCSDGSKRALVYEFMPNDSLDKYIFRKQQGRVALSIEQLYHISIGVARGIEYLHNRCAMQI LHFDIKPHNVLLDDNFNPKLSDFGLARLYYAGDRFATVIAARGTIGYMAPELFYRNIGRVSYKADVYSFGMLLVHMAEKRNNLNAATGRSSQVYFPFWVH DQIVSTIGTPIVVGDDVTEEENETEKEDGDCRVVVHPDESRQSPSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38260			Protein kinase superfamily pro...		Lus10027119 [exp]	0	1
AT5G39030			Protein kinase superfamily pro...		Lus10027116 [exp]	1.0	0.9347
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10017004 [exp]	3.2	0.8534
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10000250 [exp]	3.2	0.8803
AT1G18390			Protein kinase superfamily pro...		Lus10027117 [exp]	5.2	0.8799
AT1G11070			unknown protein		Lus10038307 [exp]	8.1	0.8490
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10040088 [exp]	8.1	0.8357
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10028201 [exp]	9.6	0.8650
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10017707 [exp]	9.8	0.7771
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10014077 [exp]	11.0	0.8352
AT2G37670			Transducin/WD40 repeat-like su...		Lus10003974 [exp]	11.2	0.8099

Compare expression of checked genes

Lus10027119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.