Plant FIBer expression Database

Lus10027121 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44180 454 / 2e-159 MAP2A methionine aminopeptidase 2A (.1)
AT3G59990 447 / 7e-157 MAP2B methionine aminopeptidase 2B (.1.2.3.4)
AT3G51800 62 / 2e-10 ATEBP1, ATG2, EBP1 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000403
[exp]
513 / 0 AT2G44180 682 / 0.0 methionine aminopeptidase 2A (.1)
Lus10005292
[exp]
256 / 6e-84 AT3G59990 419 / 6e-147 methionine aminopeptidase 2B (.1.2.3.4)
Lus10010592
[exp]
221 / 3e-69 AT3G59990 292 / 6e-96 methionine aminopeptidase 2B (.1.2.3.4)
Lus10003379
[exp]
51 / 1e-06 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Lus10027818
[exp]
49 / 5e-06 AT3G51800 602 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Lus10002851
[exp]
47 / 9e-06 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Lus10005046
[exp]
44 / 0.0001 AT3G51800 604 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G133200
[exp]
449 / 1e-157 AT3G59990 716 / 0.0 methionine aminopeptidase 2B (.1.2.3.4)
Potri.004G084800
[exp]
446 / 2e-156 AT3G59990 712 / 0.0 methionine aminopeptidase 2B (.1.2.3.4)
Potri.006G102200
[exp]
54 / 5e-08 AT3G51800 573 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Potri.016G119700
[exp]
54 / 5e-08 AT3G51800 565 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00557 Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence
>Lus10027121 pacid=23151574 polypeptide=Lus10027121 locus=Lus10027121.g ID=Lus10027121.BGIv1.0 annot-version=v1.0
ATGGTTGATGAAGGTTTGAATCAACAACTCTCTAATAATGAAGAGAATGGCACTGAGGAAAAGAGTGGGAGTTTGGAGCCTTCTATAAGCAACGAGAATG
ACGAATGTTCTTCTGGGTTAAAGGATGATGATGACAAGAAAGTGCTCATCCAAGGATACTTGTCCATTAACTTATGGCGCACAACATCTGAAGAAAAGAG
AGAGTTGGAGCGGCTGGAGAAGCCGATATATAATTCTGTTCGACAAGCTGCAGAAGTTCATCGACAGGTTCGTAAATATATCAAAAGCATTTTGAAGCCT
GGAATGTTAATGATCGACATTTGTGAGTTTTTGGAAAATATGGGTTGCTACTCATTGGACTGCAAATACGGTGACAAGACAGTGCTTCAGTATGATGATG
TAATGAAGTTGGACTTCGGTACCCATATAGATGGATACATAGTGGACAGTGCCTTTACTGTGGCATTCAATCCCATGTTTGATCCGCTGCTTGAAGCTTC
ACGTAAGGCAACCTACACTGGTATTAAGGAACCTGGAATTGATATGCGTCTCTGTGATGTTGGTGCTGCAATACAAGAGGTCATGGAATCTTATGAGGTT
GAAATAAATGGAAAGGTGTTCCAAGTCAAAAGCATTAGAAACTTGAATGGACATGGCATTGGGCGTTATAAAATTCACGCTGGAAAATCAGTTCCCAATG
TGAAAGGAGGGGAGCAGACTAAGATGGAAGAGGGTGAATTTTATGCAATTGAAACATTTGGATCCACAGGAAAAGGATATATCGAAGAGGATCTGGAATG
CAGTCATTACATGAAAGACTATGACGTCGGGCATGTGCCATTGGGGATGGCAAGAGCCAAGCAGCTGCTAGCAACAATAGACAAGAACTTATCGACCTTA
GCCTTCTGTAGACAATCCTTGGACCGCCTCGGTGAAACCAAGTACTTGATGGCGATGAAGAATTTATGCGCTGAAGTTAAGCCCAAGTTTGGCTCGTCAA
GTTTAGTTAACGAGCCAGGATTGAGCTTAAGCTTGAGTTAG
AA sequence
>Lus10027121 pacid=23151574 polypeptide=Lus10027121 locus=Lus10027121.g ID=Lus10027121.BGIv1.0 annot-version=v1.0
MVDEGLNQQLSNNEENGTEEKSGSLEPSISNENDECSSGLKDDDDKKVLIQGYLSINLWRTTSEEKRELERLEKPIYNSVRQAAEVHRQVRKYIKSILKP
GMLMIDICEFLENMGCYSLDCKYGDKTVLQYDDVMKLDFGTHIDGYIVDSAFTVAFNPMFDPLLEASRKATYTGIKEPGIDMRLCDVGAAIQEVMESYEV
EINGKVFQVKSIRNLNGHGIGRYKIHAGKSVPNVKGGEQTKMEEGEFYAIETFGSTGKGYIEEDLECSHYMKDYDVGHVPLGMARAKQLLATIDKNLSTL
AFCRQSLDRLGETKYLMAMKNLCAEVKPKFGSSSLVNEPGLSLSLS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G44180 MAP2A methionine aminopeptidase 2A (... Lus10027121
[exp]
0 1
AT5G61820 unknown protein Lus10017315
[exp]
5.5 0.9586
AT2G36780 UDP-Glycosyltransferase superf... Lus10003322
[exp]
5.7 0.9586
AT1G14160 Uncharacterised protein family... Lus10037160
[exp]
5.8 0.9640
AT2G36950 Heavy metal transport/detoxifi... Lus10022617
[exp]
8.9 0.9582
AT4G38540 FAD/NAD(P)-binding oxidoreduct... Lus10034467
[exp]
9.8 0.9557
AT5G36930 Disease resistance protein (TI... Lus10007821
[exp]
16.2 0.9550
AT2G23450 Protein kinase superfamily pro... Lus10011652
[exp]
20.0 0.9552
AT1G11260 ATSTP1, STP1 sugar transporter 1 (.1) Lus10042516
[exp]
20.0 0.9563
AT5G65790 MYB AtMYB68 myb domain protein 68 (.1) Lus10028248
[exp]
20.2 0.9540
AT2G46960 CYP709B1 "cytochrome P450, family 709, ... Lus10034134
[exp]
21.5 0.9301

Lus10027121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.