Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16220 530 / 0 Protein phosphatase 2C family protein (.1) AT1G79630 518 / 0 Protein phosphatase 2C family protein (.1.2.3) AT3G02750 452 / 2e-155 Protein phosphatase 2C family protein (.1.2.3) AT1G03590 394 / 3e-133 Protein phosphatase 2C family protein (.1) AT5G36250 391 / 3e-132 Protein phosphatase 2C family protein (.1) AT4G03415 387 / 2e-130 Protein phosphatase 2C family protein (.1.2) AT5G01700 310 / 2e-101 Protein phosphatase 2C family protein (.1.2) AT3G05640 301 / 3e-98 Protein phosphatase 2C family protein (.1.2) AT5G27930 298 / 3e-97 Protein phosphatase 2C family protein (.1.2) AT3G16800 265 / 1e-84 Protein phosphatase 2C family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000402 [exp] 914 / 0 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10022588 [exp] 398 / 2e-135 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10018570 [exp] 395 / 2e-133 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10039802 [exp] 393 / 1e-132 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10033708 [exp] 392 / 3e-132 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10031631 [exp] 391 / 4e-132 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1) Lus10041277 [exp] 409 / 5e-131 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10021486 [exp] 386 / 2e-130 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10037431 [exp] 404 / 3e-128 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G473300 [exp] 578 / 0 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.004G066200 [exp] 577 / 0 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G054200 [exp] 512 / 3e-179 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 491 / 3e-171 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.019G103100 [exp] 398 / 1e-134 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 394 / 4e-133 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 335 / 7e-110 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 328 / 3e-107 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.010G006200 [exp] 311 / 4e-102 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2) Potri.018G059800 [exp] 309 / 9e-102 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10027122 pacid=23151513 polypeptide=Lus10027122 locus=Lus10027122.g ID=Lus10027122.BGIv1.0 annot-version=v1.0 ATGGGAACTTGTTATTCATCCATGGGGAAGGAGGGGAAAGAGAATGGAGAAGGGACAGAAACGCCGACAAATGGCTCCCCAAGGAAGAACAAGTGGAGAA AGAAGAGCAGAGATAGGAAATCTGGCGGCGGTGATCAGGAGAGTAGTTCACTGCATCGGATTCAAGGGAGAATGGTGATGAGTGGTTGCAGTAAAATCGC TTGCTTGCATACACAACAGGGGAAGAAAGGGACAAATCAGGACGCCATGATTGTCTGGGAGAATTTTGGGTCCAGAAACAATGCAGTATTCTGCGGAGTA TTTGATGGCCATGGCCCTTCCGGTCATATGGTTTCCAGAATAGTTCGGGATTCACTTCCTATATTGTTGAATAAGCAGTGGCAAGTTGGTGCCAATGGGG AACATAGCAGCCTGGAAAAGACTGGAAACTCTCTTGGGAGTATGGATTCTGAGGAGAATTCTTCTGTATGTGGTGATGATGAATCATATGACTCAATGGA GGTTGAGGAAAGTGACAAGGTGCCGGAGGTGTATGTGCCACTGAAAAGGTCTATGTTAAAAGCGTTCAAGTTGATGGATAAGGAGCTGAAGCTACATCCT ACAATTGATTGCTTTTGCAGTGGAACAACTTCCGTGACTTTGATAAAGCTGGATGAGGATCTCATTCTCGGAAACGTTGGTGATTCTAGAGCGGTGCTGG CAACTAGAGCTGATGACAATTCTTTGCTTGCTGTTCAATTGACTGTTGACTTGAAGCCTGATCTTCCAAGAGAAGCTGCCAGGATCCAGCAATGTAAAGG AAGGGTCTTTGCATTGCAGGATGAGCCAGAAGTTGCACGTGTGTGGTTGCCTAATAGCGATTCACCTGGTCTAGCAATGGCTAGAGCTTTCGGTGACTTC TGCCTCAAGGATTTTGGTTTAATTTCCGTCCCAGACCTTTACTACCGTCGCCTCACATTGAAAGATGAATTCATCATTCTTGCCTCTGATGGGGTATGGG ATGTTATTTCAAATAAGGAAGCTGTGGATATTGTGGCTTCAGCCCCTGGTCGTGCAACTGCTGCTAGGGCGTTGATCGATTGCGCTGTTCGTGCTTGGAA ATTAAAATACCCCACTTCCAAAAACGATGATTGTGCTGTCGTGTGCCTCTTTCTGGATCATTCACTTGCAGAAAAAGTTACAGGGGAAGTGCTGGAGGCA AACGATGAACTGGTGGCAACTCAAGCCACCACGGTTTCTGGGGATGCAGAAATGCACGAGAATTCTCATGATCACGTTCTGACCCATTCGGGAACTACAA GATGCTCTGACGAGATTGTGCCAGTGTGCGAATCTACAGAGGTGAGAATAAATGCAACGAGCCAGACCCGGAGTCAGTCCAAGAGGAGCCTTGCTGAGTG CATTTCGAGTAGGGAGGAAGATGAGTGGTCAGCATTAGAAGGTATTACTAGGGTTAATAGTCTTCTGAGCATTCCCAGGTTTTTATCAGGAGATAGAAGA TCATCGGGAAGCAGGAGGAAATGGTTATAA
AA sequence Show only first row Show all	>Lus10027122 pacid=23151513 polypeptide=Lus10027122 locus=Lus10027122.g ID=Lus10027122.BGIv1.0 annot-version=v1.0 MGTCYSSMGKEGKENGEGTETPTNGSPRKNKWRKKSRDRKSGGGDQESSSLHRIQGRMVMSGCSKIACLHTQQGKKGTNQDAMIVWENFGSRNNAVFCGV FDGHGPSGHMVSRIVRDSLPILLNKQWQVGANGEHSSLEKTGNSLGSMDSEENSSVCGDDESYDSMEVEESDKVPEVYVPLKRSMLKAFKLMDKELKLHP TIDCFCSGTTSVTLIKLDEDLILGNVGDSRAVLATRADDNSLLAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLPNSDSPGLAMARAFGDF CLKDFGLISVPDLYYRRLTLKDEFIILASDGVWDVISNKEAVDIVASAPGRATAARALIDCAVRAWKLKYPTSKNDDCAVVCLFLDHSLAEKVTGEVLEA NDELVATQATTVSGDAEMHENSHDHVLTHSGTTRCSDEIVPVCESTEVRINATSQTRSQSKRSLAECISSREEDEWSALEGITRVNSLLSIPRFLSGDRR SSGSRRKWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16220			Protein phosphatase 2C family ...		Lus10027122 [exp]	0	1
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039414 [exp]	1.4	0.9112
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	3.2	0.8871
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10041794 [exp]	3.5	0.9028
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004558 [exp]	4.9	0.8696
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	5.7	0.8506
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10041545 [exp]	6.7	0.9020
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10019241 [exp]	7.3	0.8174
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10034045 [exp]	8.1	0.8836
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10013132 [exp]	10.8	0.8653
AT1G79910			Regulator of Vps4 activity in ...		Lus10011455 [exp]	12.0	0.8553

Compare expression of checked genes

Lus10027122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.