Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56290 978 / 0 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) AT3G11540 60 / 5e-09 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G04240 58 / 2e-08 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G48150 54 / 2e-07 CDC23, APC8 anaphase-promoting complex subunit 8 (.1) AT2G32450 54 / 4e-07 Calcium-binding tetratricopeptide family protein (.1) AT1G05150 53 / 9e-07 Calcium-binding tetratricopeptide family protein (.1) AT1G80410 52 / 2e-06 OMA, EMB2753 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT3G16320 49 / 1e-05 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G08320 47 / 3e-05 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G20000 46 / 8e-05 CDC27b, HBT HOBBIT, CDC27 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032883 [exp] 914 / 0 AT5G56290 758 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Lus10021336 [exp] 62 / 2e-09 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 61 / 3e-09 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003576 [exp] 57 / 4e-08 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 54 / 4e-07 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 53 / 8e-07 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033182 [exp] 52 / 2e-06 AT2G32450 1323 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10024597 [exp] 52 / 2e-06 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10010627 [exp] 52 / 2e-06 AT2G32450 1148 / 0.0 Calcium-binding tetratricopeptide family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G170000 [exp] 1080 / 0 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.001G473100 [exp] 1028 / 0 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.016G075700 [exp] 62 / 1e-09 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G208900 [exp] 62 / 2e-09 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.012G075000 [exp] 54 / 4e-07 AT3G48150 957 / 0.0 anaphase-promoting complex subunit 8 (.1) Potri.003G113400 [exp] 53 / 6e-07 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.019G025600 [exp] 53 / 9e-07 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 52 / 2e-06 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G234900 [exp] 50 / 8e-06 AT1G05150 1239 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.002G027900 [exp] 49 / 2e-05 AT1G05150 1226 / 0.0 Calcium-binding tetratricopeptide family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10027124 pacid=23151542 polypeptide=Lus10027124 locus=Lus10027124.g ID=Lus10027124.BGIv1.0 annot-version=v1.0 ATGGCGATGCGCGAATTAGTATCGGGAGGCGCTGCTTGCGCCGTCCCAGGTTCCTCATCTTCCTCCAATCCTCTCGGCGCTCTCGCCAACGCTCTCATCG GCTCCTCTTCTAAGACTCAGGAACGACTTAATGAAATCCCCACGTCGACTTCCACCGGTTCGGAGAACAGGTTTTTCCAGCAACCGGATGATCCTTTGCG GGCACTTCATGGGACGGAGATTGACGGCCAATTCGCTCCTCCCACAGCTCAGGGGTCTCAATTTCTTCGTGGATTTCGTGGTGCTGATCAGAATGGGTTC GCTGGTGTATGGGATGAGGTGTCTGGACTTCCTCCACCTCCTCCTCAGGCTGGCTTTCTTAATCCTCAGCAATTTAGTGATGGCTCTCCACAAGCTATGC TATCAACCTGTTTGCGTGCGTTTGTTGGCAGTGGTCGTGAAGGGATTCCTCTCAATCAGCTTCCAATGCCTATATTAGGATTATCTGAAGGTGACAAACA ATGTATACGCGACCGTAGCAGTATAATGGCCCGACACATTTTTGCGGATAAAAGTGAAGATTTCATTAATGGACAGGTAAATGCACTGCTGTCGACGCTG GACATTGACAATCAAGTGTGTGCTAATGGGCCTCCAGCCTCACGATTTCATGAACTGGATAATTATTGGAATGAGTCTCAAGGTGCTATCAGACCTGCTC CTCCTCATGCTGCTGATGGATGGATTACAGAATTTAATAAGAACAGAGTAGATCATGGTGATCCCAGTGGTTGGGTTCAATCATTTCAACAGCAGCATGG TGCCAATGGTTGGGCATCCGAATTTGAGCAGGAGCAACGATTTGGAGTATTAAATCCAATAAGAGCAGCAAATATTCCAGATTTAGCTGCGATGGAGCAA ACTCGCATGCTGGCACACACACTAGCTCAAAACAATGATCCCAAATTCCAGAACTCAAAGTTTCTTCAGTTTATGTCAAAGATGAGCCGCGGTGAACTCA TCATTGATGATAATCAAGTCAAGCCTGCATCTGCGTCCGGGGATTGGGCAGGAGAGTTTCAAGAGCAGTATAGTGCTGGCCCTTCATGGGCGGATGAGTA TGCAAATAACCAGGCAAGTAAAATTTTGTTGACAATCATCCGTCGTGGACCGGATCAGTGGGCGAATCAATACATTACTGAACGTGAACAAAATGGACCT GCTGAAGATGAATGGGCAAATGAGTTCTCAAAGTTGCAAGTCAATGACTGGGTGGAAGAATATGGGCAACAGACTGGTGAAGGTGGGGCTGATAGTTGGA CAGCTGCATATGATGACTTTTTGAATGAGCAAATTGCTGCAAAGCAGCAGAGTTCAAAGGGAGTTTATGAATTCTCTGAGATGAATCCTTACGTCGGTCA TCCCAATCCTTTGAAAGAAGGCCAAGAGCTCTTCCGCAAAGGGCTTTTAAGTGAAGCAGTCCTTGCCTTAGAGGCAGAAGTTATGAAAAATCCTGAAAAT GCAGAAGGTTGGAGGTTGCTTGGAATAGCACATGCGGAAAATGATGATGATCATCAGGCTATAGCAGCTATGATGCGGGCACAAGAAGCTGACCCCACGA ATCTTGAAGTCCTCCTAGCTCTTGGTGTAAGCCATACAAATGAGTTGGAGCAAGCGGCTGCACTGAAGTATTTGTATGGGTGGTTACATAACCACCCAAA GTATGGAAATCTTGCACCATCGGAGACGCCCTCTTTGTTTTATGCCGACGTGGCTAAATTGTTTGAAGATGCTGCTCAGATGTCGCCCGAAGATGCTGAT GTGCACATAGTACTTGGCGTCCTTTACAACTTGTCCCGAGAATACGATAAAGCCATTGAATCCTTCCGAGATGCTCTGAAACTGAAGCCACAGGATTATT CGTTATGGAACAAGCTTGGTGCTACACAGGCAAATAGTGTTCAAGGTGCTGATGCTATTCTCGCTTATCAGCAGGCCCTTGATTTGAAGCCCAATTACGT GCGTGCGTGGGCAAATATGGGAATCAGTTTTGCCAACCAGGGCAAGTATGAAGACTCTATACGGTATTATGTGAGGGCACTAGCAATGAACCCTAAGGCT GATAATGCCTGGCAGTACTTGAGAATTTCGCTGTGCTGTGCGTCTAGGGAAGACATGATCAATGCTTGTGACGCACGGAACCTGGATCTTCTTCAGAAAG AATTCCCACTGTAG
AA sequence Show only first row Show all	>Lus10027124 pacid=23151542 polypeptide=Lus10027124 locus=Lus10027124.g ID=Lus10027124.BGIv1.0 annot-version=v1.0 MAMRELVSGGAACAVPGSSSSSNPLGALANALIGSSSKTQERLNEIPTSTSTGSENRFFQQPDDPLRALHGTEIDGQFAPPTAQGSQFLRGFRGADQNGF AGVWDEVSGLPPPPPQAGFLNPQQFSDGSPQAMLSTCLRAFVGSGREGIPLNQLPMPILGLSEGDKQCIRDRSSIMARHIFADKSEDFINGQVNALLSTL DIDNQVCANGPPASRFHELDNYWNESQGAIRPAPPHAADGWITEFNKNRVDHGDPSGWVQSFQQQHGANGWASEFEQEQRFGVLNPIRAANIPDLAAMEQ TRMLAHTLAQNNDPKFQNSKFLQFMSKMSRGELIIDDNQVKPASASGDWAGEFQEQYSAGPSWADEYANNQASKILLTIIRRGPDQWANQYITEREQNGP AEDEWANEFSKLQVNDWVEEYGQQTGEGGADSWTAAYDDFLNEQIAAKQQSSKGVYEFSEMNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVMKNPEN AEGWRLLGIAHAENDDDHQAIAAMMRAQEADPTNLEVLLALGVSHTNELEQAAALKYLYGWLHNHPKYGNLAPSETPSLFYADVAKLFEDAAQMSPEDAD VHIVLGVLYNLSREYDKAIESFRDALKLKPQDYSLWNKLGATQANSVQGADAILAYQQALDLKPNYVRAWANMGISFANQGKYEDSIRYYVRALAMNPKA DNAWQYLRISLCCASREDMINACDARNLDLLQKEFPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10027124 [exp]	0	1
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10032883 [exp]	1.0	0.9452
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10003405 [exp]	1.4	0.9386
AT1G11060			WAPL (Wings apart-like protein...		Lus10001211 [exp]	3.5	0.9146
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10018895 [exp]	5.3	0.9031
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	6.9	0.9170
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10042101 [exp]	7.4	0.8999
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10027482 [exp]	9.8	0.9023
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	10.0	0.9132
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Lus10012733 [exp]	11.5	0.8715
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10037876 [exp]	14.1	0.8786

Compare expression of checked genes

Lus10027124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.