Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56260 278 / 2e-97 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1) AT5G16450 242 / 4e-83 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) AT3G02770 241 / 1e-82 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032885 [exp] 335 / 1e-119 AT5G56260 279 / 9e-98 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1) Lus10026835 [exp] 254 / 5e-88 AT5G16450 299 / 1e-105 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) Lus10020212 [exp] 254 / 5e-88 AT5G16450 299 / 1e-105 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) Lus10020211 [exp] 185 / 6e-61 ND 225 / 8e-77
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G169700 [exp] 288 / 2e-101 AT5G56260 265 / 3e-92 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1) Potri.019G053800 [exp] 256 / 1e-88 AT5G16450 292 / 5e-103 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) Potri.013G085700 [exp] 252 / 3e-87 AT5G16450 282 / 5e-99 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF03737 [flax] [poplar] RraA-like Aldolase/RraA
Representative CDS sequence Show only first row Show all	>Lus10027126 pacid=23151494 polypeptide=Lus10027126 locus=Lus10027126.g ID=Lus10027126.BGIv1.0 annot-version=v1.0 ATGGCAAGTATAGCAACAGCCGAAGCATGCGACTCGAACGCAGCCCTTCTCGCGAGCGGAGACCTACGAGTCCTGCAGCCGATCTTCAAGATCTACGGGC AGAGCAATGCATTCTCGGGGCCGATCGTGACCCTGAAACTGTTCGAGGACAACGTTCTCGTCAGAGAGATGCTTGAGACCAGAGGAGAAGGCAGGGTGCT AGTTGTGGACGGGGCAGGGAGCATGAGATGTGCATTGGTGGGAGGGAATCTGGGCCAGCTGGCCCAGAACATGGGGTGGGCTGGGATCATGGTGAACGGA TGCATTCGAGATGTCGATGAGATAAACGCCTGCGATATCGGTGTCCGAGCGTTGGCTTCGCATCCGATGAAGTCGAGCAAGAGAGGGCTTGGGGAGAAGC ATGTGACTGTCCAGATTGGTGGGACTTTGATCCGTGATGGGGAATGGTTGTATGCTGACAGTGATGGTATTCTCATTTCTAAAACTGAGCTTTCTGTTTG A
AA sequence Show only first row Show all	>Lus10027126 pacid=23151494 polypeptide=Lus10027126 locus=Lus10027126.g ID=Lus10027126.BGIv1.0 annot-version=v1.0 MASIATAEACDSNAALLASGDLRVLQPIFKIYGQSNAFSGPIVTLKLFEDNVLVREMLETRGEGRVLVVDGAGSMRCALVGGNLGQLAQNMGWAGIMVNG CIRDVDEINACDIGVRALASHPMKSSKRGLGEKHVTVQIGGTLIRDGEWLYADSDGILISKTELSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10027126 [exp]	0	1
AT1G31120		KUP10	K+ uptake permease 10, K+ upta...		Lus10038362 [exp]	1.4	0.9259
AT4G34660			SH3 domain-containing protein ...		Lus10017500 [exp]	3.0	0.9073
AT5G19930			Protein of unknown function DU...		Lus10033068 [exp]	3.9	0.9249
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	4.9	0.9257
AT1G11340			S-locus lectin protein kinase ...		Lus10013910 [exp]	8.5	0.9185
AT3G57550		GK-2, AGK2	GUANYLATE KINAS 2, guanylate k...		Lus10011328 [exp]	14.2	0.8923
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Lus10040538 [exp]	15.2	0.8971
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10014922 [exp]	15.9	0.8999
AT4G21920			unknown protein		Lus10006774 [exp]	16.7	0.9078
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Lus10027021 [exp]	17.9	0.9165

Compare expression of checked genes

Lus10027126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.