Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04220 263 / 3e-87 Plant protein of unknown function (DUF868) (.1) AT4G12690 254 / 7e-84 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT3G13229 239 / 4e-78 Plant protein of unknown function (DUF868) (.1) AT5G48270 226 / 2e-72 Plant protein of unknown function (DUF868) (.1) AT5G28150 175 / 4e-53 Plant protein of unknown function (DUF868) (.1) AT3G04860 168 / 3e-50 Plant protein of unknown function (DUF868) (.1) AT5G11000 120 / 2e-31 Plant protein of unknown function (DUF868) (.1) AT2G25200 105 / 4e-26 Plant protein of unknown function (DUF868) (.1) AT2G27770 101 / 8e-25 Plant protein of unknown function (DUF868) (.1) AT2G36470 49 / 2e-06 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032896 [exp] 602 / 0 AT2G04220 264 / 1e-87 Plant protein of unknown function (DUF868) (.1) Lus10039183 [exp] 263 / 7e-87 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10013755 [exp] 258 / 5e-85 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10006223 [exp] 172 / 3e-52 AT4G12690 213 / 2e-68 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Lus10043317 [exp] 162 / 1e-47 AT2G04220 216 / 1e-68 Plant protein of unknown function (DUF868) (.1) Lus10019467 [exp] 157 / 8e-46 AT2G04220 220 / 2e-70 Plant protein of unknown function (DUF868) (.1) Lus10042600 [exp] 153 / 5e-44 AT5G28150 310 / 3e-105 Plant protein of unknown function (DUF868) (.1) Lus10036872 [exp] 146 / 6e-42 AT4G12690 202 / 2e-64 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Lus10001787 [exp] 144 / 3e-41 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G467500 [exp] 342 / 3e-118 AT2G04220 270 / 5e-90 Plant protein of unknown function (DUF868) (.1) Potri.005G068100 [exp] 270 / 6e-90 AT2G04220 385 / 4e-135 Plant protein of unknown function (DUF868) (.1) Potri.007G101000 [exp] 249 / 1e-81 AT2G04220 369 / 7e-129 Plant protein of unknown function (DUF868) (.1) Potri.015G084500 [exp] 202 / 4e-63 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.005G050900 [exp] 191 / 5e-59 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.012G089100 [exp] 191 / 1e-58 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.013G038000 [exp] 189 / 3e-58 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.010G047700 [exp] 181 / 3e-55 AT5G48270 223 / 3e-71 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 170 / 5e-51 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 164 / 8e-49 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [flax] [poplar] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Lus10027127 pacid=23151609 polypeptide=Lus10027127 locus=Lus10027127.g ID=Lus10027127.BGIv1.0 annot-version=v1.0 ATGGCTAATCTTCTGCCAAGATTAGAATCAATCCAACACGCACAAAACTCAAAGCTAACAACCACGGCAGAAGATGGGCAATCAACCAAAAAGGCTCCCC AAAGCTCAGTCACCTTCATCTACGAAGCCAAAATCGTCGATAAAATTCGAAACATTACGGTCACATGGAGCAAGAACGTCGGCAATAACTACACCCTAGT CATCACGGTCGAAAACCCTAGCAACGAAGAGCCCTACACCTTCAAGCTCGACATAAAAGCATGGCAGTTCTGGGGCAAAAAGGGCCTGAAATCATTTGAC GTGCACGAGAAGCGAGTGGACGTGTATTGGGATTTCAGGCAGGCGAAATTCTCGAGCAGCCCCCAACCTTCTTCGGACTATTACGTGGCGCTTGTGGACC AGGACGAGATAAGTTTAGTGTTGGGAGGCATGAAAGACGACGCGTACAAGAGAACCAAGAAGGAACCCTCTCCTGAGGAGCCTGTCTTGCTGTGCAAGAA AGAAAACGTGCTAGGCAAGAAACTGTTCTGTACCAAGACAATGTGGCAGAACAACGACGAAAAGGAGCATGATTTAACCATAGAGACGTCTATATCGGGA CTGGGCGATTCAGAGATGTGGATCAGCATAGACGGGTTCGAAGTGATTCATATCATGAACCTGCAGTGGAGATTCCGTGGGAACGAGAATCTAACAGTGA ACGATGTTCCGGTGCAGATATTTTGGGACGTGCATGACTGGTTGTTTAATGGGTCGGGAACGGGACAAGGGTTATTCGTTTTCAGTCCCGGAGCAGTGGA GGAAAACAAACATACCTGTGGGCCGAAAGTTGAAGATTCATCCAGAGAGAGGGAATCAAATGCCGAGTTCTTTCATGTTATTTATGCTTGGAAATTTGAG TAA
AA sequence Show only first row Show all	>Lus10027127 pacid=23151609 polypeptide=Lus10027127 locus=Lus10027127.g ID=Lus10027127.BGIv1.0 annot-version=v1.0 MANLLPRLESIQHAQNSKLTTTAEDGQSTKKAPQSSVTFIYEAKIVDKIRNITVTWSKNVGNNYTLVITVENPSNEEPYTFKLDIKAWQFWGKKGLKSFD VHEKRVDVYWDFRQAKFSSSPQPSSDYYVALVDQDEISLVLGGMKDDAYKRTKKEPSPEEPVLLCKKENVLGKKLFCTKTMWQNNDEKEHDLTIETSISG LGDSEMWISIDGFEVIHIMNLQWRFRGNENLTVNDVPVQIFWDVHDWLFNGSGTGQGLFVFSPGAVEENKHTCGPKVEDSSRERESNAEFFHVIYAWKFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04220			Plant protein of unknown funct...		Lus10027127 [exp]	0	1
AT5G22050			Protein kinase superfamily pro...		Lus10004110 [exp]	4.7	0.9165
AT3G02250			O-fucosyltransferase family pr...		Lus10036833 [exp]	5.8	0.8743
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10039197 [exp]	7.5	0.9046
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10024196 [exp]	7.7	0.8614
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10024661 [exp]	8.0	0.8761
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10022467 [exp]	10.6	0.8620
AT1G10800			unknown protein		Lus10037441 [exp]	11.7	0.9051
AT4G02210			unknown protein		Lus10027531 [exp]	13.2	0.8181
AT4G14420			HR-like lesion-inducing protei...		Lus10041149 [exp]	14.7	0.8728
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10037048 [exp]	14.8	0.8988

Compare expression of checked genes

Lus10027127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.