Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26550 298 / 2e-103 Got1/Sft2-like vescicle transport protein family (.1) AT5G56020 291 / 2e-100 Got1/Sft2-like vescicle transport protein family (.1) AT5G24170 58 / 2e-10 Got1/Sft2-like vescicle transport protein family (.1) AT5G23550 50 / 1e-07 Got1/Sft2-like vescicle transport protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032895 [exp] 391 / 1e-136 AT4G26550 338 / 8e-116 Got1/Sft2-like vescicle transport protein family (.1) Lus10029537 [exp] 49 / 4e-07 AT5G23550 275 / 7e-96 Got1/Sft2-like vescicle transport protein family (.1) Lus10039619 [exp] 49 / 6e-07 AT5G23550 279 / 3e-97 Got1/Sft2-like vescicle transport protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G164900 [exp] 303 / 2e-105 AT5G56020 325 / 5e-114 Got1/Sft2-like vescicle transport protein family (.1) Potri.014G170700 [exp] 285 / 3e-98 AT4G26550 310 / 3e-108 Got1/Sft2-like vescicle transport protein family (.1) Potri.001G467200 [exp] 69 / 2e-15 AT4G26550 72 / 9e-17 Got1/Sft2-like vescicle transport protein family (.1) Potri.015G017300 [exp] 55 / 2e-09 AT5G24170 220 / 1e-74 Got1/Sft2-like vescicle transport protein family (.1) Potri.012G012700 [exp] 47 / 2e-06 AT5G24170 224 / 3e-76 Got1/Sft2-like vescicle transport protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04178 [flax] [poplar] Got1 Got1/Sft2-like family
Representative CDS sequence Show only first row Show all	>Lus10027128 pacid=23151532 polypeptide=Lus10027128 locus=Lus10027128.g ID=Lus10027128.BGIv1.0 annot-version=v1.0 ATGCAGAAAATGGCACAGAGTTGGTTCACAGGCAGTGGCAGCGAAGATCCGCAGCAGCAGAAGCCCTCTTCGTCTCTTTTGTCCGAATGGAACTCTTACG CCACGTCCAGAAACGCCGATGAGAGCAGCGGAATGGGCCTCGGATTCGATCTTGAATCTGCCGTCCGGTCCGCCAACGAATCGGTCACCGGCACCTTCAA CGTGGTTTCTAAAGGAGTTAGAGAGATACCTGGGAGTTTGCAGACTGCTACTAGCAATATACCTTCAGGGAAAGCTCTGATGTATTTCGGCTTATTCCTA GCAACTGGTGTATTCTTTGTTTTCATTGCATTTTCTCTGTTCCTTCCGGTAATAGTAATTGTGCCGCAGAAGTTTGCAATATGCTTCACTCTTGGATGTT TGTTTATCATCGCTTCATTATTTGCACTCAAAGGCCCACAGAACCAATTTGCGCATATGATTTCAAAAGAGAGACTTCCATTTTCCTTGGGGTTCATAGG CAGTATGGTTGGCACAATATATGTTTCCATGGTGCTACACAGCTACGTTCTTTCAGTACTCTTCTCTGTTATACAGGTGATGGCACTTGCATACTATGGA ATCTCTTACTTTCCTGGTGGATCTACTGGGTTGAAGTTCCTGACATCTTCATTGACTTCAACTGCAACTAGAGCTTTCGGGAGGTGA
AA sequence Show only first row Show all	>Lus10027128 pacid=23151532 polypeptide=Lus10027128 locus=Lus10027128.g ID=Lus10027128.BGIv1.0 annot-version=v1.0 MQKMAQSWFTGSGSEDPQQQKPSSSLLSEWNSYATSRNADESSGMGLGFDLESAVRSANESVTGTFNVVSKGVREIPGSLQTATSNIPSGKALMYFGLFL ATGVFFVFIAFSLFLPVIVIVPQKFAICFTLGCLFIIASLFALKGPQNQFAHMISKERLPFSLGFIGSMVGTIYVSMVLHSYVLSVLFSVIQVMALAYYG ISYFPGGSTGLKFLTSSLTSTATRAFGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10027128 [exp]	0	1
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10018812 [exp]	2.4	0.8801
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10013349 [exp]	4.6	0.8660
AT4G31860			Protein phosphatase 2C family ...		Lus10042416 [exp]	6.2	0.8661
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Lus10010536 [exp]	10.4	0.8631
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10033609 [exp]	13.2	0.8536
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10025728 [exp]	14.9	0.8162
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10002581 [exp]	15.7	0.8495
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10037999 [exp]	16.5	0.8321
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10032667 [exp]	16.9	0.8016
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10003047 [exp]	18.2	0.8388

Compare expression of checked genes

Lus10027128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.