Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26555 232 / 2e-77 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G19830 73 / 2e-15 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G05420 52 / 3e-08 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G10060 52 / 7e-08 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G12340 50 / 3e-07 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G73655 49 / 7e-07 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G43560 48 / 1e-06 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13410 48 / 1e-06 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G60370 47 / 4e-06 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G39710 46 / 6e-06 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032895 [exp] 318 / 4e-108 AT4G26550 338 / 8e-116 Got1/Sft2-like vescicle transport protein family (.1) Lus10036206 [exp] 69 / 4e-14 AT4G19830 260 / 4e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10038345 [exp] 68 / 1e-13 AT4G19830 262 / 3e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10035560 [exp] 61 / 4e-11 AT3G10060 296 / 2e-102 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10027729 [exp] 49 / 8e-07 AT3G10060 285 / 1e-97 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10024735 [exp] 48 / 8e-07 AT5G45680 194 / 1e-63 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10025889 [exp] 47 / 9e-07 AT5G48580 196 / 1e-65 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10042897 [exp] 48 / 1e-06 AT3G60370 312 / 8e-109 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10031121 [exp] 49 / 2e-06 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G467100 [exp] 246 / 4e-83 AT4G26555 268 / 3e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G119800 [exp] 76 / 1e-16 AT4G19830 270 / 5e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G096600 [exp] 52 / 5e-08 AT3G10060 272 / 6e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G129200 [exp] 52 / 1e-07 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.014G045600 [exp] 50 / 3e-07 AT3G60370 302 / 3e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.015G130900 [exp] 47 / 3e-06 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.012G048300 [exp] 47 / 3e-06 AT1G18170 249 / 3e-83 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.007G134600 [exp] 46 / 8e-06 AT2G43560 286 / 2e-98 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248200 [exp] 44 / 1e-05 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.017G017500 [exp] 44 / 4e-05 AT2G43560 281 / 3e-96 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10027129 pacid=23151530 polypeptide=Lus10027129 locus=Lus10027129.g ID=Lus10027129.BGIv1.0 annot-version=v1.0 ATGGATTGTCTCTCAAGTTTTAAAAGCCAATCACTCCTTCAAAAACTTATCTCTAGTATTGGCATCATCCTCATGAATTCTCTGTCCTCGCTCTCCAGTT TTCCTCGGCCAAGGGCAAGGAAAACCAAAAATGCTAAGAATAAGCCTCTCATGGCTTCCACTCTAGTTTCTGCGTCCATGGGAATGAACAAGTTCCCAAG GAGAGTGGTTTTGGAGTTGATTACCCACACTTCCTTTCTACCACTTCTTAATCCGGCATTGGCTGTTGTACCCAGTCCAGATATGGACGAGCCGCCTGAA ATCATTCGGACGTTGAAGCTTGACAATGGGGTTAGGATTCAAGAGGTGATTGAAGGAGAAGGGCCAGAAGCTGGGGAAGGAGACCTCGTTGAGATAAACT ATGTGTGTAGACGCTCTAATGGATATTTTGTACACAGCACTGTGGATCAGTTTAGTGGGGAAAGCTCGCCTGTCATGCTTCCTTTGAATGAGAACCAGAT AATCAAAGGCTTGAAGGATGTTCTAATTGGGATGAAGGTTGGAGGCAAGAGAAGGGCTTTGATACCTCCATCTGTCGGATATGTGAATGAAAGCTTGAAA CCAATCCCGGAGGAGTTCGGTCCTCGGCGTAGTCTGTTCTCACATGCGACGGAGCCTCTGATATTTGAGGTGCAACTCTTGAAAGTCTTGTGA
AA sequence Show only first row Show all	>Lus10027129 pacid=23151530 polypeptide=Lus10027129 locus=Lus10027129.g ID=Lus10027129.BGIv1.0 annot-version=v1.0 MDCLSSFKSQSLLQKLISSIGIILMNSLSSLSSFPRPRARKTKNAKNKPLMASTLVSASMGMNKFPRRVVLELITHTSFLPLLNPALAVVPSPDMDEPPE IIRTLKLDNGVRIQEVIEGEGPEAGEGDLVEINYVCRRSNGYFVHSTVDQFSGESSPVMLPLNENQIIKGLKDVLIGMKVGGKRRALIPPSVGYVNESLK PIPEEFGPRRSLFSHATEPLIFEVQLLKVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Lus10027129 [exp]	0	1
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10002142 [exp]	1.4	0.9630
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002906 [exp]	2.8	0.9483
AT1G12250			Pentapeptide repeat-containing...		Lus10024602 [exp]	3.9	0.9446
AT2G03420			unknown protein		Lus10036810 [exp]	4.5	0.9418
AT1G54680			unknown protein		Lus10018965 [exp]	5.3	0.9359
AT3G56160			Sodium Bile acid symporter fam...		Lus10019540 [exp]	6.8	0.8863
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10025809 [exp]	8.1	0.9414
AT3G17930			unknown protein		Lus10042280 [exp]	8.4	0.9250
AT5G27290			unknown protein		Lus10033822 [exp]	8.5	0.9379
AT1G54680			unknown protein		Lus10033821 [exp]	8.7	0.9197

Compare expression of checked genes

Lus10027129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.