Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56200 42 / 5e-05 EMB1303 embryo defective 1303 (.1.2) AT1G30475 41 / 9e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032893 [exp] 141 / 3e-44 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163900 [exp] 67 / 3e-14 AT1G56200 56 / 2e-10 embryo defective 1303 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027131 pacid=23151520 polypeptide=Lus10027131 locus=Lus10027131.g ID=Lus10027131.BGIv1.0 annot-version=v1.0 ATGCCTGTAGCACAGGCTGTTGGCTCCTTGCCTTTGGTCTTGCTCTCACCAGCAAACCTTGGGGGTCAATGGAGTCTCCAAAGCAAGAAATTGGAACTTG GGACAACCAGAAGTCTTCCACACTTCCAGTGTTTATATCAAAGGAGACGCCATGAACTTATGGTTACTAGCTCACTGAGGCTTTCTACGCAGTTGCGTAA TCCAATGAGACGCCATTCTGCTGCTCTGAATTTAAGATGCTCTGCCTCTGGCCAGACTCAAACTGTACTGAAGCAGACACCAACCATAACGAAGGCTCCC GTAAAAGAACCAACAAAGACACCTGAAATTGACGACGGAGGGACTGGATTTCCACCTGGAGATGATGGAGGCGGCGGTGGAGGTGGCGGTGGCGGAGGGA ATTGGTCGGGTGGATTTTTCCTGTTTGGGTTCTTGGCGTTTCTGGGATTACTAAAGGATAACGAGAGTGAGAATGACGATAGAAGGAGATGA
AA sequence Show only first row Show all	>Lus10027131 pacid=23151520 polypeptide=Lus10027131 locus=Lus10027131.g ID=Lus10027131.BGIv1.0 annot-version=v1.0 MPVAQAVGSLPLVLLSPANLGGQWSLQSKKLELGTTRSLPHFQCLYQRRRHELMVTSSLRLSTQLRNPMRRHSAALNLRCSASGQTQTVLKQTPTITKAP VKEPTKTPEIDDGGTGFPPGDDGGGGGGGGGGGNWSGGFFLFGFLAFLGLLKDNESENDDRRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30475			unknown protein		Lus10027131 [exp]	0	1
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032560 [exp]	1.4	0.8630
AT3G06610			DNA-binding enhancer protein-r...		Lus10016913 [exp]	1.4	0.8265
AT5G53650			unknown protein		Lus10032946 [exp]	5.5	0.8024
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10041513 [exp]	6.7	0.7929
AT5G44710			unknown protein		Lus10001221 [exp]	7.2	0.7296
AT5G24165			unknown protein		Lus10014921 [exp]	7.3	0.7727
AT2G21290			unknown protein		Lus10018053 [exp]	7.5	0.7847
AT3G29280			unknown protein		Lus10018197 [exp]	7.7	0.7722
AT3G62790			NADH-ubiquinone oxidoreductase...		Lus10035034 [exp]	9.2	0.7934
AT3G29130			unknown protein		Lus10038450 [exp]	11.7	0.7323

Compare expression of checked genes

Lus10027131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.