Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00850 115 / 3e-33 GIF3 GRF1-interacting factor 3 (.1) AT1G01160 101 / 7e-28 GIF2 GRF1-interacting factor 2 (.1.2) AT5G28640 96 / 1e-25 ATGIF1, GIF1, AN3 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032892 [exp] 167 / 2e-53 AT4G00850 185 / 3e-59 GRF1-interacting factor 3 (.1) Lus10005524 [exp] 83 / 1e-20 AT5G28640 152 / 2e-46 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Lus10006568 [exp] 84 / 2e-20 AT5G28640 145 / 4e-43 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Lus10008847 [exp] 60 / 4e-13 AT1G01160 66 / 2e-15 GRF1-interacting factor 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G103900 [exp] 138 / 3e-42 AT4G00850 132 / 3e-38 GRF1-interacting factor 3 (.1) Potri.002G177600 [exp] 131 / 1e-39 AT4G00850 152 / 4e-46 GRF1-interacting factor 3 (.1) Potri.012G023100 [exp] 99 / 2e-27 AT4G00850 90 / 6e-23 GRF1-interacting factor 3 (.1) Potri.013G043700 [exp] 98 / 3e-26 AT5G28640 134 / 4e-39 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Potri.019G013100 [exp] 96 / 1e-25 AT5G28640 135 / 1e-39 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05030 [flax] [poplar] SSXT SSXT protein (N-terminal region)
Representative CDS sequence Show only first row Show all	>Lus10027132 pacid=23151573 polypeptide=Lus10027132 locus=Lus10027132.g ID=Lus10027132.BGIv1.0 annot-version=v1.0 ATGCAGCAGCAACCGCAGATGATTCCCATGATGCCTTCATTTCCGCCTCAGAATGTCACTACTGAGCAGATCCAAAAGTTTCTTGATGAGAACAAAAAGC TTATCTTAGCCATATTGGACAATCAAAACCTTGGCAAACTGGCTGAATGTGCTGAATACCAAGCACAACTACAAAAGAATCTAATGTATCTAGCAGCAAT CGCTGATGCGCAACCACAGGGACCCACAGTACATCCTCAGATGGCTCTGCACCCAGCAGCGACGCAGCAAGGAGCATACTACATGCAGCATCCTCAAGCC GCAGCAATGGGGGCACAGCAGCCTGGGAGTTTTCCACCCAGGATGCCGGTACAATTCAATAACCCACATCAAATGTAG
AA sequence Show only first row Show all	>Lus10027132 pacid=23151573 polypeptide=Lus10027132 locus=Lus10027132.g ID=Lus10027132.BGIv1.0 annot-version=v1.0 MQQQPQMIPMMPSFPPQNVTTEQIQKFLDENKKLILAILDNQNLGKLAECAEYQAQLQKNLMYLAAIADAQPQGPTVHPQMALHPAATQQGAYYMQHPQA AAMGAQQPGSFPPRMPVQFNNPHQM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10027132 [exp]	0	1
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10004261 [exp]	8.5	0.7625
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10009275 [exp]	9.5	0.7812
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10034747 [exp]	9.5	0.8128
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002915 [exp]	12.4	0.7972
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10023844 [exp]	15.5	0.7559
AT1G01730			unknown protein		Lus10030384 [exp]	17.7	0.7831
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10042169 [exp]	19.4	0.7567
AT1G54460			TPX2 (targeting protein for Xk...		Lus10042543 [exp]	25.1	0.7850
AT2G32600			hydroxyproline-rich glycoprote...		Lus10021506 [exp]	28.1	0.7664
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Lus10039306 [exp]	28.3	0.7890

Compare expression of checked genes

Lus10027132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.