Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35960 68 / 8e-15 NHL12 NDR1/HIN1-like 12 (.1) AT2G35970 63 / 7e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11660 63 / 7e-13 NHL1 NDR1/HIN1-like 1 (.1) AT4G09590 61 / 5e-12 NHL22 NDR1/HIN1-like 22 (.1) AT3G52470 60 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06330 55 / 5e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 47 / 4e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22200 44 / 6e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01410 42 / 2e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 40 / 0.0001 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000157 [exp] 88 / 3e-22 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016960 [exp] 79 / 1e-18 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10021286 [exp] 78 / 2e-18 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10029406 [exp] 69 / 7e-15 AT3G11660 252 / 7e-86 NDR1/HIN1-like 1 (.1) Lus10004202 [exp] 68 / 7e-15 AT3G11660 257 / 8e-88 NDR1/HIN1-like 1 (.1) Lus10043410 [exp] 49 / 2e-07 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034175 [exp] 44 / 1e-05 AT3G44220 210 / 7e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10013327 [exp] 39 / 0.0004 AT3G11660 147 / 2e-44 NDR1/HIN1-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G204200 [exp] 68 / 7e-15 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1) Potri.016G071500 [exp] 67 / 2e-14 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.009G019600 [exp] 55 / 9e-10 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.005G088000 [exp] 48 / 2e-07 AT3G44220 194 / 5e-63 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G006000 [exp] 42 / 3e-05 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G002400 [exp] 41 / 6e-05 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 40 / 0.0002 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 39 / 0.0003 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027133 pacid=23151587 polypeptide=Lus10027133 locus=Lus10027133.g ID=Lus10027133.BGIv1.0 annot-version=v1.0 ATGGCTGTCGTGGGTATCACCGTCTTCGTAATATGGGTCGTCCTCCGCCAAGCAAGCCATCCTTCATCCTACAAGATGCCACCGCCGGCTATGCCTTCAA TAACACATCCACTCCCATTTTGCTCACCCCCAGTTTCCAGCTCACTTTCTCCACGCGGAACCCCAACGACAGAATCGGGATCTACTACGACCAGCTCGAA GTTTTACGCAAAGTACCGGAGCGAGAAAATCACCTGCAAGGCTCAAGTCGAGCCGTTCTACCGGGGGCACAAGGAGACTGACGTCTGGTCTCCTTTAGCG TACGGGAACGATGTTCCTGTATCTCCTTACAACGCAGCCACCCTCGTACTTGACCAGGCAAGGGTACTGTACTCGTGTCGATCAAGATGGACGGCCGCGT CCGGTTGA
AA sequence Show only first row Show all	>Lus10027133 pacid=23151587 polypeptide=Lus10027133 locus=Lus10027133.g ID=Lus10027133.BGIv1.0 annot-version=v1.0 MAVVGITVFVIWVVLRQASHPSSYKMPPPAMPSITHPLPFCSPPVSSSLSPRGTPTTESGSTTTSSKFYAKYRSEKITCKAQVEPFYRGHKETDVWSPLA YGNDVPVSPYNAATLVLDQARVLYSCRSRWTAASG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52470			Late embryogenesis abundant (L...		Lus10027133 [exp]	0	1
					Lus10000351 [exp]	4.8	0.8202
					Lus10030838 [exp]	6.2	0.7612
					Lus10002886 [exp]	6.8	0.8202
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	8.3	0.8202
AT5G02930			F-box/RNI-like superfamily pro...		Lus10032255 [exp]	9.6	0.8202
					Lus10020530 [exp]	10.0	0.6943
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10006679 [exp]	10.7	0.8202
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10041332 [exp]	11.7	0.8202
					Lus10014748 [exp]	12.7	0.8202
AT3G26880			Plant self-incompatibility pro...		Lus10022631 [exp]	13.6	0.8202

Compare expression of checked genes

Lus10027133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.