Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31660 389 / 5e-133 unknown protein AT4G02465 56 / 3e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032891 [exp] 553 / 0 AT1G31660 548 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112500 [exp] 417 / 5e-144 AT1G31660 566 / 0.0 unknown protein Potri.001G394000 [exp] 411 / 7e-142 AT1G31660 530 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05291 [flax] [poplar] Bystin Bystin
Representative CDS sequence Show only first row Show all	>Lus10027134 pacid=23151523 polypeptide=Lus10027134 locus=Lus10027134.g ID=Lus10027134.BGIv1.0 annot-version=v1.0 ATGAAAAATCATTTCATTGCATCCAATACTCCTCGAAATCACCATAAGGAAGAAAGCCTGATAGAGTCTGGGATGAGCTTCAAGATTTTAAAAGAGGCAT TGCTTCAGCAGAAGGAGATTGAAGAGGAGGCAGAGGAGAGAAATCCTCAAAGAGAAGCGTTTGCAGCTGCTGAGGATGTGCTTGCCAATATAGGTGGAGA GGAAGAGGATGATGCTGATATTGACGACTTTGCTGGATTTTCTGAAACTCAAAGTCGCTTTGATGAGGATTTTGAGGGGGAGATTCACCCCGATGAGGAG AGAACATTGGCTGCTTTCTATTCAAATGACGCTAGTCATGAATCTACCCTTGCAGATGTCATCATTCAGAAAATAAAGGAGAAAGATGCACAAGTTGCTT CAGAAGCACGTCCACTGCCCAAAATGGACAGCTCACTCATAGATTTGTATAAAGGGGTTGGTGAGTTCATGAGTAAATACACTGCTGGAAAAGTTCCTAA AGCATTCAGAAAGATCACAACAATGGCACATTGGGAAGATGTCTTGTACCTGACTGAACCTGAGAAGTGGTCACCAAACGGAATGTATCAAGCAACAAGG ATCTTGGCCTCGAATTTGGGTACAAAAAAGGCTGAGCGATACTATAGACTGGTCTTGCTCCCACGAATTAGAGATGATATTAGGAAGCATAAGAGGTTGC ATTTTGCTCTTTATCAGTCCTTGAAGAAGTGTATGTTCAAACCTGCTGCCTTTAACAAGGGAATACTGTTTCCATTGTGCAAGTCAGGCACATGCAATTT TAGAGAAGCTGTCATTATCGGAAGTGTCATGCGGAAGGTCATTGTTGCCCTGCTGAGGCTAGCAGAAATGGAGTATTGCGGCACAACAAGTTATTTCATC AAGCTCCTCTTGGAAAAGAAATATGCATTGCCTTATCGTGTAGTCGATGCACTTGTTGCCCACTATATGAGATTCATGGAGGAGTCAAGGCTCATGCCTG TAACACCAGAGATTGTGAGAGAACTTGACAGCAGTCGGAATCGCGGTGAAAAGGAGGACGTTCTTGCTGCAATAAATATCCTTTACAGTAATGCTGCTGG GTTGGATGTTGATACCTCAGTATTCAAGTTCAACTGGATGGGTGTGGATGTTGATGAAGATAGAGATGTAGAGAGTATTGTGCCAATTTTGTTTACTTAA
AA sequence Show only first row Show all	>Lus10027134 pacid=23151523 polypeptide=Lus10027134 locus=Lus10027134.g ID=Lus10027134.BGIv1.0 annot-version=v1.0 MKNHFIASNTPRNHHKEESLIESGMSFKILKEALLQQKEIEEEAEERNPQREAFAAAEDVLANIGGEEEDDADIDDFAGFSETQSRFDEDFEGEIHPDEE RTLAAFYSNDASHESTLADVIIQKIKEKDAQVASEARPLPKMDSSLIDLYKGVGEFMSKYTAGKVPKAFRKITTMAHWEDVLYLTEPEKWSPNGMYQATR ILASNLGTKKAERYYRLVLLPRIRDDIRKHKRLHFALYQSLKKCMFKPAAFNKGILFPLCKSGTCNFREAVIIGSVMRKVIVALLRLAEMEYCGTTSYFI KLLLEKKYALPYRVVDALVAHYMRFMEESRLMPVTPEIVRELDSSRNRGEKEDVLAAINILYSNAAGLDVDTSVFKFNWMGVDVDEDRDVESIVPILFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31660			unknown protein		Lus10027134 [exp]	0	1
AT1G48320			Thioesterase superfamily prote...		Lus10036869 [exp]	2.2	0.8815
AT2G37890			Mitochondrial substrate carrie...		Lus10016522 [exp]	3.5	0.8616
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020736 [exp]	6.2	0.8660
AT1G53200			unknown protein		Lus10005971 [exp]	10.0	0.8582
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10016941 [exp]	12.2	0.8531
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039577 [exp]	13.7	0.8519
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10029816 [exp]	15.5	0.8531
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10022572 [exp]	15.7	0.8499
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031424 [exp]	15.9	0.8353
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10035109 [exp]	16.1	0.8255

Compare expression of checked genes

Lus10027134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.