Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29760 123 / 1e-32 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G26190 114 / 6e-29 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36540 99 / 6e-25 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36550 59 / 3e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032890 [exp] 358 / 1e-125 AT4G26190 214 / 7e-63 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007989 [exp] 139 / 2e-37 AT4G26190 247 / 3e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10021147 [exp] 137 / 7e-37 AT4G26190 241 / 2e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10034676 [exp] 119 / 2e-30 AT4G26190 225 / 3e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10017858 [exp] 116 / 1e-29 AT4G26190 224 / 8e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019759 [exp] 93 / 2e-22 AT2G36540 174 / 1e-53 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10016365 [exp] 54 / 1e-08 AT2G36540 87 / 1e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019760 [exp] 40 / 0.0006 AT2G36540 93 / 7e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G116400 [exp] 174 / 3e-50 AT4G26190 235 / 4e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G059000 [exp] 136 / 2e-37 AT4G26190 253 / 9e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244200 [exp] 120 / 4e-33 AT2G36540 190 / 4e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244400 [exp] 102 / 4e-26 AT2G36540 169 / 1e-51 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10027135 pacid=23151606 polypeptide=Lus10027135 locus=Lus10027135.g ID=Lus10027135.BGIv1.0 annot-version=v1.0 ATGGAACCAGTTAACAATCATTTGAATGCCAGTCCAGTTGAATTAGATGCAAGAAAGGAAACTCGAAAAGAGCATGAGATTCTGCACACTAGTTGTGCTG CAAGAAAGCTTCTGAGCTTTGATGTAACGACAGCTATTTCAGCTGTCAATATCTCTGATGAGAATGACAGTGGAGCAGCTATTCTCTCAGAGGCTGGTGG AATCAAGGATCCTTCCATTCCATTGAGTATAAGATTCCCAATTTCTTCAAAGAAGCTGCTTATTCTTGATTTGAATGGATTGTTGGTTGATGTTGTTGGT TGTCCTCCGAAAGGGCGTAAACCAGACAAAAGGGTTGGAGTTAAATCATTTTTTGCAAGGCCGTTTTATCTGGAGTTTCTCAAGTTATGCTTTGAAAGGT TCCATGTGGCTGTCTGGTCGTCAAGGACCAAGTTCATGACTCTGGAGAACAAGTACAAACCTTTGGTGTTCAAAGAACTGAAGAGAGTTTGGGAAAAGCA TGACCCTCAACTTCCATGGAAGAGAGGGTATTTCAATGAGTCGAACACATTATTAGTTGATGATTCTCCTTACAAAGCGTTACTTAATCCTGTTCACAGT GCAATCTATCCTAATTCCTACAGCTTTCAAGATATCAACGATGACTCACTTGGTGCTGGAGGAAACATAAGAGTATATCTTGGAACAGTTATGTGGAGCT GA
AA sequence Show only first row Show all	>Lus10027135 pacid=23151606 polypeptide=Lus10027135 locus=Lus10027135.g ID=Lus10027135.BGIv1.0 annot-version=v1.0 MEPVNNHLNASPVELDARKETRKEHEILHTSCAARKLLSFDVTTAISAVNISDENDSGAAILSEAGGIKDPSIPLSIRFPISSKKLLILDLNGLLVDVVG CPPKGRKPDKRVGVKSFFARPFYLEFLKLCFERFHVAVWSSRTKFMTLENKYKPLVFKELKRVWEKHDPQLPWKRGYFNESNTLLVDDSPYKALLNPVHS AIYPNSYSFQDINDDSLGAGGNIRVYLGTVMWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29760			Haloacid dehalogenase-like hyd...		Lus10027135 [exp]	0	1
					Lus10018837 [exp]	4.0	0.9455
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024933 [exp]	4.7	0.8978
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008669 [exp]	5.7	0.9383
					Lus10034352 [exp]	7.9	0.9353
					Lus10009927 [exp]	8.9	0.9311
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10030134 [exp]	9.5	0.9234
AT5G27230			Frigida-like protein (.1)		Lus10006522 [exp]	9.5	0.8833
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10032010 [exp]	9.8	0.9164
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10013799 [exp]	11.2	0.9063
					Lus10039496 [exp]	11.6	0.9266

Compare expression of checked genes

Lus10027135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.