Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13320 578 / 0 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55730 573 / 0 ATCAX5 cation exchanger 5 (.1.2) AT1G55720 531 / 0 ATCAX6 cation exchanger 6 (.1) AT5G01490 330 / 1e-108 ATCAX4, CAX4 cation exchanger 4 (.1) AT3G51860 326 / 5e-107 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1) AT2G38170 310 / 7e-101 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032889 [exp] 744 / 0 AT3G13320 434 / 7e-151 cation exchanger 2 (.1) Lus10033396 [exp] 527 / 0 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10034853 [exp] 527 / 0 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10006068 [exp] 474 / 8e-160 AT3G13320 516 / 1e-176 cation exchanger 2 (.1) Lus10009431 [exp] 367 / 9e-124 AT3G13320 404 / 3e-139 cation exchanger 2 (.1) Lus10027791 [exp] 321 / 6e-105 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10002490 [exp] 313 / 5e-102 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10004819 [exp] 312 / 2e-101 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10035507 [exp] 303 / 7e-98 AT3G51860 579 / 0.0 cation exchanger 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G166900 [exp] 635 / 0 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.001G469800 [exp] 627 / 0 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.010G249200 [exp] 535 / 0 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2) Potri.006G099900 [exp] 332 / 1e-109 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.016G115500 [exp] 330 / 7e-109 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.009G045800 [exp] 316 / 3e-103 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.001G251200 [exp] 313 / 7e-102 AT3G51860 490 / 7e-172 cation exchanger 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10027136 pacid=23151588 polypeptide=Lus10027136 locus=Lus10027136.g ID=Lus10027136.BGIv1.0 annot-version=v1.0 ATGGAAAAGAACGTACCGTTCTCACGAACTCGGTCACAGCTCGAAGTAGGTGGTGATCAGAAGTTGCCATTTGCACGAACTCGATCACAGCTCGAAGGAG TTCACCCCCCATTGAAACCATTTTCTCGAACACGGTCGCACCTCGAAGGAACTGGTCCTCCGAAACCATTTTCGCGAACCCACTCGCAACTCGAAATGAT GTCACTAACTAAGAACATATCTGACCACGAGCATGAGGAATCGAGCCTTTTAACCTCGACCGCGTTGATTCGAGCTGCGCCAGATTTTGGTGTAGCAGCT GCAGAGGCATTGTCAGGGAACAAAATCACGACGTGGAGGCGTATTTTATGCAAGAGCATACGAACCGTAGTTTTCTCAAACAAGCTGAATTTCCTCATGC CTTTTGGGCCCATAGCTATGTTACTACATGCAATGGAGGGTCATAACGGATGGGTCTTCTTACTAACGGTATTAGGCATTACACCATTGGCCGAGCGCTT AGGTTATGCAACAGAGCAGCTGACTTTCTACACCGGACCTACAATTGGGGGACTTCTGAATGCCACGTTTGGGAATGCAACTGAACTGATCATTGCTATA TATGCCTTGAGGAATGAGATGCCAAGAGTTGTGCAGCTCTCGTTACTGGGTTCGATTCTGTCCAACATGTTACTAGTGCTTGGCTGTGCATTTTTCGCAG GTGGTCTCGTTTTTCGTAGGAAGGAACAAGTGTTTGACAAGGGAAATGCTACTGTGAATTCAGGACTGCTACTAATGGCAGTAATGGGACTTCTGTTTCC AGCAGTCCTGCATTCCACACGCACGGAGGTTCATTATGGGAAATCAGAGTTGGCTCTTTCAAGATTCAGCAGTTGTGTTATGCTTCTGGTGTATGCTGCT TATCTCTTTTTCCAGCTGAATTCACGAAAGGATCATCAACCGCCTACCGACGAAACTAATATGGAGGGTGATGATAATGATGATGATGATGAGGTCCCAG ATTTGACTAAAATGGAGTCAATTGTATGGCTTTCCATAATGACTGCTTGGATTTCTATCTTGTCAGAGTATTTAGTTGATGCTATAGAGGGAGCATCTCT TGCATGGAACATACCAATTGCCTTCATTGGAGTCATCTTGCTCCCTATAGTTGGGAATGCAGCAGAGCACACCAGTGCTATTATGTTTGCAATGAAAGAT AAGCTTGATATCTCAGTGGGTGTGGCGATAGGTTCATCAACTCAGATATCTATGTTTGGGATTCCATTTTGTGTGGTGGTTGGATGGATGATGGGACGAC CCATGGACTTAAACTTCCAGCTTTTCGAAACGGCAACACTTTTCATCACTGTCATAGTTGTGGCCTTCTTCCTCCAGGAAGGAACTTCTAATTACTTCAA AGGACTCATGTTGATCATGTGCTACGTAATTGTTGCAGCAAGCTTCTTCGTGCACGAAGATCCTACCGCCATAATAACAAGTTAG
AA sequence Show only first row Show all	>Lus10027136 pacid=23151588 polypeptide=Lus10027136 locus=Lus10027136.g ID=Lus10027136.BGIv1.0 annot-version=v1.0 MEKNVPFSRTRSQLEVGGDQKLPFARTRSQLEGVHPPLKPFSRTRSHLEGTGPPKPFSRTHSQLEMMSLTKNISDHEHEESSLLTSTALIRAAPDFGVAA AEALSGNKITTWRRILCKSIRTVVFSNKLNFLMPFGPIAMLLHAMEGHNGWVFLLTVLGITPLAERLGYATEQLTFYTGPTIGGLLNATFGNATELIIAI YALRNEMPRVVQLSLLGSILSNMLLVLGCAFFAGGLVFRRKEQVFDKGNATVNSGLLLMAVMGLLFPAVLHSTRTEVHYGKSELALSRFSSCVMLLVYAA YLFFQLNSRKDHQPPTDETNMEGDDNDDDDEVPDLTKMESIVWLSIMTAWISILSEYLVDAIEGASLAWNIPIAFIGVILLPIVGNAAEHTSAIMFAMKD KLDISVGVAIGSSTQISMFGIPFCVVVGWMMGRPMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLIMCYVIVAASFFVHEDPTAIITS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10027136 [exp]	0	1
AT1G02810			Plant invertase/pectin methyle...		Lus10029866 [exp]	9.5	0.6697
AT2G14830			Regulator of Vps4 activity in ...		Lus10018577 [exp]	12.4	0.6283
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034334 [exp]	16.2	0.6299
					Lus10016963 [exp]	29.3	0.6260
AT1G33811			GDSL-like Lipase/Acylhydrolase...		Lus10036046 [exp]	38.2	0.6040
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10004511 [exp]	64.5	0.6000
AT1G71140			MATE efflux family protein (.1...		Lus10008911 [exp]	70.4	0.6069
AT2G27550		ATC	centroradialis (.1)		Lus10015520 [exp]	96.2	0.5755
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10016228 [exp]	99.1	0.5874
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005661 [exp]	101.1	0.5797

Compare expression of checked genes

Lus10027136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.