Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55620 914 / 0 CLCF, ATCLC-F, CLC-F chloride channel F (.1.2) AT4G35440 333 / 7e-103 CLCE, ATCLC-E, CLC-E chloride channel E (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032888 [exp] 1337 / 0 AT1G55620 1052 / 0.0 chloride channel F (.1.2) Lus10026573 [exp] 175 / 9e-48 AT4G35440 455 / 4e-155 chloride channel E (.1.2) Lus10013857 [exp] 119 / 2e-29 AT4G35440 300 / 1e-96 chloride channel E (.1.2) Lus10013858 [exp] 108 / 5e-26 AT4G35440 171 / 2e-48 chloride channel E (.1.2) Lus10026574 [exp] 100 / 7e-23 AT4G35440 162 / 3e-45 chloride channel E (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G472700 [exp] 902 / 0 AT1G55620 860 / 0.0 chloride channel F (.1.2) Potri.004G209900 [exp] 319 / 3e-97 AT4G35440 730 / 0.0 chloride channel E (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain PF00654 [flax] [poplar] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Lus10027138 pacid=23151527 polypeptide=Lus10027138 locus=Lus10027138.g ID=Lus10027138.BGIv1.0 annot-version=v1.0 ATGTCGGGAGTTGTCGGAGGGGACAGAGCAGAATACAGTGATCAGACTCATCTATTGAGATCCTATCCACACAGCCACAGAGCCACCACCATCGATGGCG ACGAGGACGACGACATTGGCGACTTGGAAATGGCTTCTCAAGTTTCTACCCCGACCTCCAGTGGCAATATCACCGGCAACAGAGTGGCCTCCGGAGCTGG TGGCAGCGGAGAAGGTATTAAGGATCTGTTTCTTAAGCACTTGGATCGGGGATTTTCCGGCCGACGGTACTCGAGTCTCAAGCGTGTCGAGCGGGATCGA GATGCTGATAATTCCGATCATCATGACGATTATGGCGGTGGTGGAGGTAGTGGTAGTCATTACAGCGACGATGATACATTAGCCGATTCTGCGCCTCCGG AATGGGCGCTCCTGCTCGTCGGCTGCCTCCTCGGCCTCGCCACTGGTCTTTGTGTGGCTGCTTTTAATAAAGGGGTTCATGTAATACACGAGTGGTCATG GGCTGGAACTCCAAATGAGGGTGCTGCCTGGCTTCGGCTGCAAACTTTGGCAGACACTTGGCACAGGATTCTCTTAGTACCAGTAACAGGAGGAGTCATT GTTGGGATGATGCACGGTTTAGTGGAAATATTGGAGAAGATAAGGCAGAGTAGTTCATCTGAAAGGCAAGGCTTCGACTTTGTTGCTGGAGTCTTCCCCG CTATAAAAGCTATTCAGGCAGCTGTTACTTTAGGCACCGGTGGCTCTTTGGGTCCTGAAGGGCCCAGTGTAGATATTGGGAAGTCGTGTGCAAACGGGAT CTCAGTAATGATGGAAAACAACAGAGAGAGAAAAATTGCTCTTGTTGCTGCTGGATCAGCAGCCGGGATTGCTTCAGGTTTCAATGCTGCTGTTGCTGGT TGCTTTTTTGCTATTGAAACTGTCCTCAGGCCTCGCCGAGCTGAGAATTCACCCCCTTTTACAACTGCAATGATCATATTGGCTTCTGTTATATCATCAA CTGTATCTAATGTTTCCCTGGGAACAAAATCGGCTTTTATAGTGCCACCATACGATTTGAAATCTGCTGCAGAATTACCTTTATACCTGATATTGGGAAT GCTCTGTGGTGCGGTAAGTGTGGTATTCACTCGCTTGGTCGCTTGGTTCACCAAGTCATTTGAATTTATTAGAGAAAGATTTGGTCTTCCTGCTGTCGTA TGTCCTGCACTAGGTGGTTTGGGGGCTGGGATAATTGCCCTCAAGTATCCAGGAATTTTGTATTGGGGTTTCACAAATGTTGAAGAAATATTGCACACTG GAAAGAGTGCGTCTGCCCCTGGAATCTGGTTACTAACCCAACTTGCAGTTGCCAAAGTTGTGGCAACGGCTTTATGCAAGGGATCAGGACTTGTAGGAGG ACTTTATGCACCAAGCTTGATGATTGGTGCTGCTGTTGGTGCTGTATTTGGTGGTTCAGCAGCAGAAATAATCAACTCTGCTATTCCGGGAAATGCTGCA GTTGCAGAGCCACAGGCATATGCATTGGTTGGAATGGCTGCAACACTTGCTTCAGTTTGTTCCGTTCCATTGACATCTGTCTTGCTTTTATTTGAGTTGA CAAAAGACTACAGAATCATTCTCCCCCTCATGGGAGCAGTCGGATTGGCAATATGGGTTGCTTCTGTTTTCAATCAGCCCAAGGAAACCGAGTCATCTGA TACGCGTGTTCTGGGAAGAGGTTATTCTTCAGTTTCAAATTCTGACGACAAGCATGAATCTCACTGGAGAAGAAATGAATACGGAGATGACCTAGAACTC TCTGTCTTGCAAAATCCAGTTGAACATGAGGGAGCCCTCGAAGATTTTCTTTTGGAAGATCTAAAGGTTTCAAGGGTGATGTCAAAGAACTATCCGAAGG TCTCAGCATCCTTGACTTTGAAGGAAGCTATAAAACATATGGATACCAACAAGCAGAATTGTGTGTTTGTAGTTGACGATGAAGATTTACTTGAAGGAAT ACTAACCTATGGCGACATTAGACGACTTTCCAGTAAATCCATCAATCCTTCTATCGATTCCACACTCGCAGATGTAAATAACAGTCTCGTCTCTGCGGTT TGTACACGAGGGATAAGTTATCGTGGGAAATTACGTGGACTTCTGACCTGTTACCCCGACACCAAGTTGGCTACTGCCAAGGAGCTAATGGAAGCCAAAG GGATCAAGCAGTTACCAGTGGTTAAACACGGTAGAGCATCGTGGAAAGAGAGGAAGCGAAGGATCATTGCTATTCTTCACTACGATGCAGTTTGGAACAA TATCAGAGATGAAGTAGCTCGACGAAGATCGGTGTATCAGCGTAGGAAAGAAAATGAATTGGAGTTGATTGGGAACGGTCATTGA
AA sequence Show only first row Show all	>Lus10027138 pacid=23151527 polypeptide=Lus10027138 locus=Lus10027138.g ID=Lus10027138.BGIv1.0 annot-version=v1.0 MSGVVGGDRAEYSDQTHLLRSYPHSHRATTIDGDEDDDIGDLEMASQVSTPTSSGNITGNRVASGAGGSGEGIKDLFLKHLDRGFSGRRYSSLKRVERDR DADNSDHHDDYGGGGGSGSHYSDDDTLADSAPPEWALLLVGCLLGLATGLCVAAFNKGVHVIHEWSWAGTPNEGAAWLRLQTLADTWHRILLVPVTGGVI VGMMHGLVEILEKIRQSSSSERQGFDFVAGVFPAIKAIQAAVTLGTGGSLGPEGPSVDIGKSCANGISVMMENNRERKIALVAAGSAAGIASGFNAAVAG CFFAIETVLRPRRAENSPPFTTAMIILASVISSTVSNVSLGTKSAFIVPPYDLKSAAELPLYLILGMLCGAVSVVFTRLVAWFTKSFEFIRERFGLPAVV CPALGGLGAGIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAVAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNAA VAEPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRIILPLMGAVGLAIWVASVFNQPKETESSDTRVLGRGYSSVSNSDDKHESHWRRNEYGDDLEL SVLQNPVEHEGALEDFLLEDLKVSRVMSKNYPKVSASLTLKEAIKHMDTNKQNCVFVVDDEDLLEGILTYGDIRRLSSKSINPSIDSTLADVNNSLVSAV CTRGISYRGKLRGLLTCYPDTKLATAKELMEAKGIKQLPVVKHGRASWKERKRRIIAILHYDAVWNNIRDEVARRRSVYQRRKENELELIGNGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10027138 [exp]	0	1
AT5G47490			RGPR-related (.1)		Lus10004721 [exp]	1.7	0.9065
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10003393 [exp]	2.0	0.8880
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10032888 [exp]	5.5	0.8766
AT1G06470			Nucleotide/sugar transporter f...		Lus10031370 [exp]	6.7	0.8480
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10025924 [exp]	9.5	0.8579
AT1G04200			unknown protein		Lus10006619 [exp]	11.0	0.8596
AT1G77460			Armadillo/beta-catenin-like re...		Lus10042730 [exp]	11.1	0.7633
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10035580 [exp]	11.2	0.8667
AT5G47490			RGPR-related (.1)		Lus10008520 [exp]	11.8	0.8688
AT1G24560			unknown protein		Lus10025844 [exp]	13.9	0.7425

Compare expression of checked genes

Lus10027138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.