Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56270 488 / 1e-163 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT4G26440 350 / 7e-112 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT4G26640 270 / 2e-82 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G38470 264 / 8e-80 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT2G03340 257 / 2e-77 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 247 / 1e-73 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT2G37260 198 / 4e-57 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT2G04880 181 / 1e-49 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT4G12020 167 / 8e-43 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT5G07100 152 / 3e-42 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032887 [exp] 1330 / 0 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10016595 [exp] 309 / 3e-96 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10003769 [exp] 308 / 1e-95 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10026838 [exp] 287 / 2e-86 AT5G56270 298 / 7e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10020215 [exp] 277 / 2e-84 AT5G56270 276 / 3e-84 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10043167 [exp] 267 / 8e-81 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10012215 [exp] 265 / 6e-80 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10026634 [exp] 261 / 2e-79 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10001265 [exp] 261 / 9e-79 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G472800 [exp] 801 / 0 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.011G169300 [exp] 787 / 0 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.013G086000 [exp] 306 / 1e-93 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.013G153400 [exp] 298 / 5e-92 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.019G053900 [exp] 294 / 3e-91 AT5G56270 154 / 5e-40 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.019G123500 [exp] 294 / 3e-90 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.011G087900 [exp] 284 / 5e-87 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.010G163000 [exp] 278 / 2e-85 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.008G091900 [exp] 270 / 2e-82 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.001G361600 [exp] 271 / 4e-82 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10027139 pacid=23151497 polypeptide=Lus10027139 locus=Lus10027139.g ID=Lus10027139.BGIv1.0 annot-version=v1.0 ATGGCTGGACTTGGTGATAACGTTGCAATAATCAGGGACTGGTTGCCTCCTACTCCAAGCCCGAGAGCATTTTTCTCGACGATTCTAGGTGACGACATGA GCACAAGACCGAACTCTGACCAGTCCGGGGAGACCAGAATGGATGGCCTCTTCTTTGGAACAAGGCAGCTGATGACAGCAGCAGGAAATGCTGGAAGTAG AGATGCTGGTACAGTTTCTCAGGTGACCGATTCGGGTCCTTTTTCTGAACACAACAACACGAACACCACCCCTCGTGGGGGTCTTGTGGAAAGAATGGCA GCAAGAGCTGGGTTTAATGTTCCAAAGTTGAACACTGAAAGCATCATGAGGTCCACTGACCTTTCTCTTAACCCTCAGTCTCCGTACTTGACGATACCAC CTGGTCTCAGCCCGACGAGCCTGTTGGACTCTCCTGTGTTCGTCAACTCTCTGGCACAGCCGTCCCCTACAACTGGGAAATTCTCCTTTTTCCCAAATGG TAACAGCAAGGGTTTAATGTCTGAGCCTTCTTACACAAGTAAAGATAATTTCTTTGAGGATTTCAATTCTTCTTTCGCATTCAAGACTTTTCCGGAAATG AATTCCCCTTTTCTCACTTGTCCTCCAACAAAAGTTGCTCCAGTTACTCTTCAGCAGCAATTTCCCAGCTCTGAGGCTTCGGTGCAGTCCGAGAATTCTC ATGCACAAAACAAACAGTCCCTCCATTTTGCTTCATACTTCTCCAACTCTGACAAGGAAAATCATGGTAAAGTTATTGTGAACGACACTGTTGGTGGTGG AAATGCAGTGAATTCTCCCACTCTTGACGATCAAGATGAAGAAGGAGATCGTGGAGGAGATTCCTCAATCGCTGGTGCTGGCGGTGCACCAGCCGACGAT GGATATAACTGGCGAAAATACGGACAGAAGCAAGTGAAAGGAAGCGAATATCCTCGCAGCTATTACAAATGTACGCATCAGAATTGCCCCGTAAAGAAGA AAGTCGAACGCTCCCACGAGGGACACATTACCGAGATTATATACAAGGGAGCTCACAACCATCCCAAACCACCTCCCAGCAGACGAGCTGCCATCGGAGG ATCATCATCATATTCTCTCATGGACATGCCTTTAGAAAACCCCGAACAAACCGGTGCGGAAAATGATCCGGCTTGGGCAGGTACACACAACAAGGGAACT GCTGACAACAACATTGAGGTGACATCATCTGCTTCAGCTGCCCCGGAATTTGGTAACTTTCAGGCTCAGAATCGTGCCCATTTTGAATCGAGTGAAGCGG CTGTTGATGCCTCGTCTACCTTTTCTAACGAGGAAGAAGATGAGGATCGCGCTACACATGCTAGCGTAGGTAATGATGGTGAAGAGGATGAATCAGATTC TAAGAGAAGGAAAATCGAAACTTTCACAGCTGCGGAGATGAGTGGAGCTACGAGGGCTATCCGTGAGCCAAGAGTAGTTGTCCAGACAACCAGTGAGGTT GACATACTGGACGATGGATATCGCTGGCGCAAGTATGGGCAGAAGGTTGTGAAAGGAAATCCAAATCCAAGGAGCTATTACAAGTGCACCAATGCAGGCT GCACAGTAAGAAAGCATGTAGAAAGAGCATCACACGACCTGAAGTCGGTGATCACCACATACGAAGGAAAGCACAACCACGACGTCCCTGCAGCTCGCAA CAGCAGCCATGTTGGCTCCGGAGCATCATCAGCAACACCTGCACCTTACCAGTCTGCTGCTCAACTTTCAAGACCCGAGCCACCACAAGTTCACAACAGC ATGAACCGTGGGTTTGATAGGTCAGCTGCATTTGGAACTTTCAGAAGACAACAGCAGATGGTGGGGGGACCATCATCCAGTGGCTTCTCTTTCGGAATGA ATCAGCCCGGTTTCGCCAACCTGGCAATGGCTGGATTATGTGATGGTCAACCAAAGATGCCAATGTTGCCATCAATGAATCCTTACTTAGCAGCAGGTCA GCATCAGCAACGCCCATTTGGCGAAATGGGATTCATGATGCCGAAAGGAGAACCAAAGATGGAGCCTGTCTCGGAACCTGGTTTGAATTTGTCAAACAAT CAAGCGATGTACCAGCAGATCATGAACAGGCTGCCGCTTGGTCCTCATATGTGA
AA sequence Show only first row Show all	>Lus10027139 pacid=23151497 polypeptide=Lus10027139 locus=Lus10027139.g ID=Lus10027139.BGIv1.0 annot-version=v1.0 MAGLGDNVAIIRDWLPPTPSPRAFFSTILGDDMSTRPNSDQSGETRMDGLFFGTRQLMTAAGNAGSRDAGTVSQVTDSGPFSEHNNTNTTPRGGLVERMA ARAGFNVPKLNTESIMRSTDLSLNPQSPYLTIPPGLSPTSLLDSPVFVNSLAQPSPTTGKFSFFPNGNSKGLMSEPSYTSKDNFFEDFNSSFAFKTFPEM NSPFLTCPPTKVAPVTLQQQFPSSEASVQSENSHAQNKQSLHFASYFSNSDKENHGKVIVNDTVGGGNAVNSPTLDDQDEEGDRGGDSSIAGAGGAPADD GYNWRKYGQKQVKGSEYPRSYYKCTHQNCPVKKKVERSHEGHITEIIYKGAHNHPKPPPSRRAAIGGSSSYSLMDMPLENPEQTGAENDPAWAGTHNKGT ADNNIEVTSSASAAPEFGNFQAQNRAHFESSEAAVDASSTFSNEEEDEDRATHASVGNDGEEDESDSKRRKIETFTAAEMSGATRAIREPRVVVQTTSEV DILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHVGSGASSATPAPYQSAAQLSRPEPPQVHNS MNRGFDRSAAFGTFRRQQQMVGGPSSSGFSFGMNQPGFANLAMAGLCDGQPKMPMLPSMNPYLAAGQHQQRPFGEMGFMMPKGEPKMEPVSEPGLNLSNN QAMYQQIMNRLPLGPHM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10027139 [exp]	0	1
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10031939 [exp]	1.7	0.8826
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10034840 [exp]	2.8	0.8421
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10033386 [exp]	3.7	0.8345
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	4.0	0.8546
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10039575 [exp]	4.2	0.8468
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10031626 [exp]	5.8	0.8118
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10033232 [exp]	6.0	0.8242
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10035099 [exp]	6.9	0.8354
AT5G22850			Eukaryotic aspartyl protease f...		Lus10005356 [exp]	7.5	0.8191
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10019537 [exp]	8.0	0.8304

Compare expression of checked genes

Lus10027139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.