Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001309 [exp] 94 / 2e-23 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027142 pacid=23151595 polypeptide=Lus10027142 locus=Lus10027142.g ID=Lus10027142.BGIv1.0 annot-version=v1.0 ATGGCGGAACAACAACAAGTACCGAATCAGAATACTTCTTCTCAGACACTACAGAAGCTCCCTCGGGGTTACCGATTCGATCCATCAAAAGAGGACTTGC TCAAGAACAAACATAAGTTGAGTGTTGAGGTTGAGGCACAACCATCCAATGCAAAGAAGAGGAACTTCCAAGGATGTGACGACAGTGGCTGCTCCTCGCT GCTATCTTCGAAAGTTGCGAAAATCTCTGATTGTCACGAGATAGTGCCAACAACTGATCTATCTCACCACACTGGGAAGAACAGAAAGCAGGGCCAGAGG GTTCTTATTTCTATAGCAGGAAGGAATAGCTACCAAGAATATCTGAGGTGGTCTTACTATACTGAATCAGAAGAAAGCAAGCTGATTCAAGGATGTCTGC TCCAGCAGCTTGACATGGTGAGAAGAGCTTTTGGGGATGGAGCTGCTGCTGAGGTCGGGGCTGACAAGATGTCCCAACTGTGA
AA sequence Show only first row Show all	>Lus10027142 pacid=23151595 polypeptide=Lus10027142 locus=Lus10027142.g ID=Lus10027142.BGIv1.0 annot-version=v1.0 MAEQQQVPNQNTSSQTLQKLPRGYRFDPSKEDLLKNKHKLSVEVEAQPSNAKKRNFQGCDDSGCSSLLSSKVAKISDCHEIVPTTDLSHHTGKNRKQGQR VLISIAGRNSYQEYLRWSYYTESEESKLIQGCLLQQLDMVRRAFGDGAAAEVGADKMSQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027142 [exp]	0	1
AT1G17450			B-block binding subunit of TFI...		Lus10006533 [exp]	1.4	0.8808
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006844 [exp]	4.8	0.8871
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Lus10008143 [exp]	8.0	0.8239
AT5G41980			unknown protein		Lus10018174 [exp]	9.8	0.7778
AT2G01460			P-loop containing nucleoside t...		Lus10027063 [exp]	11.2	0.8803
AT4G10930			unknown protein		Lus10032402 [exp]	13.0	0.8305
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10001406 [exp]	18.0	0.8223
AT1G11340			S-locus lectin protein kinase ...		Lus10015424 [exp]	20.3	0.8175
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	21.7	0.8620
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10032737 [exp]	22.2	0.8034

Compare expression of checked genes

Lus10027142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.