Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22060 224 / 1e-73 Receptor-like protein kinase-related family protein (.1) AT3G58310 171 / 2e-52 Domain of unknown function (DUF26) (.1) AT3G21990 134 / 3e-38 Domain of unknown function (DUF26) (.1) AT4G20670 132 / 2e-37 Domain of unknown function (DUF26) (.1) AT4G05200 132 / 7e-35 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT2G31620 123 / 4e-34 Receptor-like protein kinase-related family protein (.1) AT3G21940 119 / 2e-32 Receptor protein kinase-related (.1) AT3G21960 116 / 3e-31 Receptor-like protein kinase-related family protein (.1.2) AT3G21970 114 / 1e-30 Domain of unknown function (DUF26) (.1) AT4G20610 115 / 2e-29 Protein with domains of unknown function (DUF26 and DUF1204) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039699 [exp] 206 / 1e-65 AT3G22060 171 / 5e-52 Receptor-like protein kinase-related family protein (.1) Lus10039698 [exp] 158 / 5e-49 AT3G22060 75 / 2e-17 Receptor-like protein kinase-related family protein (.1) Lus10018377 [exp] 135 / 4e-36 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 130 / 4e-34 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10038227 [exp] 123 / 1e-33 AT5G48540 261 / 1e-87 receptor-like protein kinase-related family protein (.1) Lus10007632 [exp] 128 / 2e-33 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10025875 [exp] 116 / 4e-31 AT5G48540 261 / 2e-87 receptor-like protein kinase-related family protein (.1) Lus10018380 [exp] 115 / 1e-29 AT4G05200 324 / 2e-104 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10027144 [exp] 109 / 1e-29 ND 121 / 1e-34
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120500 [exp] 233 / 7e-77 AT3G22060 278 / 6e-95 Receptor-like protein kinase-related family protein (.1) Potri.007G120401 [exp] 229 / 2e-75 AT3G22060 271 / 3e-92 Receptor-like protein kinase-related family protein (.1) Potri.007G120400 [exp] 229 / 2e-75 AT3G22060 270 / 8e-92 Receptor-like protein kinase-related family protein (.1) Potri.007G120700 [exp] 228 / 5e-75 AT3G22060 275 / 2e-93 Receptor-like protein kinase-related family protein (.1) Potri.017G039966 [exp] 224 / 2e-73 AT3G22060 273 / 5e-93 Receptor-like protein kinase-related family protein (.1) Potri.007G120501 [exp] 221 / 3e-72 AT3G22060 271 / 4e-92 Receptor-like protein kinase-related family protein (.1) Potri.017G040450 [exp] 221 / 4e-72 AT3G22060 274 / 4e-93 Receptor-like protein kinase-related family protein (.1) Potri.017G040049 [exp] 194 / 2e-61 AT3G22060 221 / 9e-72 Receptor-like protein kinase-related family protein (.1) Potri.017G040300 [exp] 189 / 2e-59 AT3G22060 226 / 3e-74 Receptor-like protein kinase-related family protein (.1) Potri.007G120600 [exp] 171 / 2e-52 AT3G22060 214 / 2e-69 Receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10027145 pacid=23145516 polypeptide=Lus10027145 locus=Lus10027145.g ID=Lus10027145.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCCACTAGTTATAATCTCCTAATCATCACTCTTCTAGCCACCGTCACCACCCTCGTCGCCGGCGACCAACCACTATTCCACTTCTGTTCAC CTTCCCAGCAATCCTCAAACCACAGCGACGTCCCTACTTTCAACGGTAACCTCAAGAGCCTCTTCTCCAAGCTCTCAAACCAAGCCCCGCCCACCGGCTT CGCCAACGTCGCCGTCGGCGGCTACCGCAGTGGTGGCCGGGTCTACGGCCTCGCCCTCTGCCGTGCTGACGTCACCTCCGCCGCCGACTGCAGATCGTGC GTCACCGACGCCGCCAGCGAGATTTCCGCCCGCTGCCCTTCGAACAGCAGCGCAATTATTTGGTACGACAACTGCATGCTCAAGTACAAGGACACAGACT TCTTCGGCAAGGTAGACAACGACCAGAGGTTCTACATGTGGAACACGAGGGTGGTGTCCGATCCGGCCACGTTCAACGCCAAGACGAAGGAGTTACTGAC CAAGCTATCGAAAGAGGCTTCGGCTTCTTCGCCCTCGAAGCTCTTTGCGTCGGGGGAGATGGAGATCGACGAGAAGAACAAGGGGATCAAGCTTCGCGGG CTTGTTCAGTGCACTCGAGACTTGTCGGGGGAGGATTGCGAGAAGTGTGTGAATGGGATCATAGGGGAGATTCCTAGTTGTTGTGATGGTAAAGAAGGTG GTAGGGTTGTGGGTGGGAGTTGTAACTTTAGGTACGAGATTTACCCTTTTCTGAATGGTACTAGCTAG
AA sequence Show only first row Show all	>Lus10027145 pacid=23145516 polypeptide=Lus10027145 locus=Lus10027145.g ID=Lus10027145.BGIv1.0 annot-version=v1.0 MASSTSYNLLIITLLATVTTLVAGDQPLFHFCSPSQQSSNHSDVPTFNGNLKSLFSKLSNQAPPTGFANVAVGGYRSGGRVYGLALCRADVTSAADCRSC VTDAASEISARCPSNSSAIIWYDNCMLKYKDTDFFGKVDNDQRFYMWNTRVVSDPATFNAKTKELLTKLSKEASASSPSKLFASGEMEIDEKNKGIKLRG LVQCTRDLSGEDCEKCVNGIIGEIPSCCDGKEGGRVVGGSCNFRYEIYPFLNGTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22060			Receptor-like protein kinase-r...		Lus10027145 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10019806 [exp]	3.5	0.8863
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034260 [exp]	4.2	0.8624
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006302 [exp]	5.3	0.8048
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020935 [exp]	7.3	0.8149
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10000800 [exp]	10.8	0.8275
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Lus10002742 [exp]	17.3	0.7888
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10029122 [exp]	17.3	0.8136
AT5G57500			Galactosyltransferase family p...		Lus10019998 [exp]	17.6	0.8366
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011013 [exp]	17.7	0.8069
AT3G14130			Aldolase-type TIM barrel famil...		Lus10008133 [exp]	27.2	0.7337

Compare expression of checked genes

Lus10027145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.