Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23140 403 / 6e-132 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G21410 389 / 2e-126 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G05200 384 / 1e-124 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23230 364 / 6e-119 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT3G45860 364 / 1e-116 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23180 361 / 8e-116 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G21400 352 / 7e-112 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (.1) AT4G11460 351 / 2e-111 CRK30 cysteine-rich RLK (RECEPTOR-like protein kinase) 30 (.1) AT4G23130 348 / 4e-111 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23220 350 / 7e-111 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031579 [exp] 484 / 3e-163 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015091 [exp] 501 / 2e-161 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031582 [exp] 461 / 1e-154 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031580 [exp] 451 / 3e-150 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10018382 [exp] 404 / 2e-132 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007633 [exp] 384 / 2e-124 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015092 [exp] 372 / 6e-121 AT4G23180 397 / 1e-130 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018379 [exp] 371 / 2e-119 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015094 [exp] 371 / 2e-119 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120900 [exp] 402 / 2e-131 AT4G23180 454 / 3e-151 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G030000 [exp] 400 / 1e-130 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025200 [exp] 399 / 2e-130 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 399 / 3e-130 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G029700 [exp] 395 / 8e-129 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030012 [exp] 394 / 9e-129 AT4G23220 564 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.004G026100 [exp] 395 / 2e-128 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G029000 [exp] 394 / 2e-128 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.010G069800 [exp] 393 / 4e-128 AT4G21410 514 / 4e-175 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030200 [exp] 392 / 4e-128 AT4G23220 558 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10027146 pacid=23145393 polypeptide=Lus10027146 locus=Lus10027146.g ID=Lus10027146.BGIv1.0 annot-version=v1.0 ATGTACAATTTGATCATGCTTCTAGCTCCGTTGCTTTTTCATTTTTGCTACCTTGTTACAGCACAAACAGATCCCTTTGTGTTCTGTGGCACAAATGGGA ACTACACCTCAGGAAGTCCCTACCAGCAGAACCTGAACCTGATGTTGAGCTCGCTCGCTTCGAATGCTTCCGTTACAGGTTATTACACTACTTTGAAAGG ATCTAGTCCGGATACTGTTTATGGCCTCATTCAGTGCAGGGCTTATCTGTCCAAACAAGACTGTCAAACTTGTGCAGACAAGCTAGTCATGCAGGCCGGA CAGCTCTGTCCTTACCAGAAGACAGCTACTAGGTTCAGCGGGGAGTGTTCGGTCCAGTTTGCGGACCGGAGCTTCTTTGGCGAAGTCGAAACTTCTCGGA CATTCATGATTGTTACTTATGGCGGAGGGAGACCGGTGAATCACACTCGTTTCGTTAGTCAGTTGGAGGTTTTGCTTGGTGACCTGGCGTTACTGGCTCA GAGTGATCCTAATAGACTGGCTACTGGGAATGTTAGTTACTTGAGTTTTCGACGGATATTCGGTATGGTTGAGTGCGCGAGAGATTTGTCGGAGGATGAC TGTTTTGGTTGCCTTCAAGGGCTTTTCGAGGCTGTTCCTTCGAATGATCAGGATGCTGCTCAGGTGTCGGCTGTAAACTGCAATGCTCGATATGGTCTCT CTAGATTCTTTCAAGATCCGCCTTCTCTTTTATCACCACCACCATCTCCTCCTCCTCCGACGAGCTCAACTCCACAGTTACCTCCAGCTCCTCCTCCATG GTCTGCAAGTAGTAATGAGAAAGGTTCTCGAACCATCGTAAAGTTAGTCACTCCGGTGGCTCTTGTGATCACGCTTGTGGCTCTTGTATTGATTATGATT CTGGGAATCTACTATTGCTTCTTCCTCAAGAAACACAGGGGCACAAAAGATGACGATTCGAGCTCAGAAACACTTCTGATTCCTTTCAAGGTACTTCGAG AAGCTACCTGCAACTTTTCGGATGCAAACAAGCTTGGACAAGGGGGTTTCGGAGCAGTTTATAAGGGGAAAATGTCTGATGGGAAAGAGGTAGCTGTAAA GAGGCAACTAACAAGCTCGAGTCAAGGCATGGACGAGGTTAAAACGGAAGTGATGTTGGTCGCTAAGCTCGAACATACAAACCTCGTAAGGCTGCTGGGA TTCTGCATTCAAGGAAAGGAGAGGTTACTTGTTTATGAGTACCTTCCTAATGGGAGCTTGGACAAAGTACTATTTGGTAACGCAACTCTCAAGAAGTCCA AACTAAACTGGGAAACAAGGTACAAAATCATCGTCGGGATTGCTCGAGGGATGCAGTACCTGCATGAAGATTCACGGCTGAACATAGTTCACCGCGATTT GAAAGGAGGGAACGTTCTGTTGGACGAGTGGATGAACCCCAAGATTTCTGATTTCGGGACTGCAAGGCTCTTCTCGGGGACTCAGACTCACCTCAACACA GGAAGGGTTGCTGGGACTCGTGGCTACATGCCCCCAGAGTATGTCAACAACGGTATCTTCTCTACGAAATCTGATGTCTATAGCTTCGGAATTCTGATCT TGGAGATCATTACCGGCGATAGGATCTCTAGTCCCCGCAACTACTCCAATCTTCAGAGTGATGCATGGGAATATTGGATGAAAGGGAGAGCCCTGGACTT GCTGGACCGAAGCTTGCGTGGCAAGTATTCGGGAGAAGAAGCTATGAAGTGCATCTACGTTGGTTTGTTATGTGTCCAGAAAGTTGCTGCTAAGAGGCCT ACGATGTCATCCATTGTTCTGATGCTTAGCAGTAACACGTCAACCTTCTCGCGTCCATCAAAGCCGGGATTTTTCATTAGGAATGAAGGTTCCATGGAGG ATTCCGAAATGGAAGAAGCGCCTCTAGACCCGTCGATAAATGGTGTGACGATAACCAGCTTATCTGGCCGTTGGTGA
AA sequence Show only first row Show all	>Lus10027146 pacid=23145393 polypeptide=Lus10027146 locus=Lus10027146.g ID=Lus10027146.BGIv1.0 annot-version=v1.0 MYNLIMLLAPLLFHFCYLVTAQTDPFVFCGTNGNYTSGSPYQQNLNLMLSSLASNASVTGYYTTLKGSSPDTVYGLIQCRAYLSKQDCQTCADKLVMQAG QLCPYQKTATRFSGECSVQFADRSFFGEVETSRTFMIVTYGGGRPVNHTRFVSQLEVLLGDLALLAQSDPNRLATGNVSYLSFRRIFGMVECARDLSEDD CFGCLQGLFEAVPSNDQDAAQVSAVNCNARYGLSRFFQDPPSLLSPPPSPPPPTSSTPQLPPAPPPWSASSNEKGSRTIVKLVTPVALVITLVALVLIMI LGIYYCFFLKKHRGTKDDDSSSETLLIPFKVLREATCNFSDANKLGQGGFGAVYKGKMSDGKEVAVKRQLTSSSQGMDEVKTEVMLVAKLEHTNLVRLLG FCIQGKERLLVYEYLPNGSLDKVLFGNATLKKSKLNWETRYKIIVGIARGMQYLHEDSRLNIVHRDLKGGNVLLDEWMNPKISDFGTARLFSGTQTHLNT GRVAGTRGYMPPEYVNNGIFSTKSDVYSFGILILEIITGDRISSPRNYSNLQSDAWEYWMKGRALDLLDRSLRGKYSGEEAMKCIYVGLLCVQKVAAKRP TMSSIVLMLSSNTSTFSRPSKPGFFIRNEGSMEDSEMEEAPLDPSINGVTITSLSGRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10027146 [exp]	0	1
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033737 [exp]	1.4	0.8618
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10028628 [exp]	5.1	0.8244
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10017883 [exp]	10.0	0.7168
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10030995 [exp]	10.2	0.7985
AT4G27290			S-locus lectin protein kinase ...		Lus10014813 [exp]	11.6	0.8010
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	11.7	0.7789
					Lus10005269 [exp]	12.0	0.6427
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	12.7	0.7789
AT1G70780			unknown protein		Lus10039287 [exp]	13.6	0.7789
AT5G05340			Peroxidase superfamily protein...		Lus10003573 [exp]	14.1	0.7846

Compare expression of checked genes

Lus10027146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.