Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26560 526 / 2e-173 ATP-dependent RNA helicase, putative (.1) AT2G35340 288 / 1e-84 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT1G32490 285 / 7e-84 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT5G13010 278 / 2e-80 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT2G47250 263 / 9e-78 RNA helicase family protein (.1) AT3G62310 258 / 5e-76 RNA helicase family protein (.1) AT4G16680 243 / 7e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G18465 225 / 6e-64 RNA helicase family protein (.1) AT5G14900 204 / 4e-60 helicase associated (HA2) domain-containing protein (.1) AT1G26370 211 / 1e-58 RID1 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037145 [exp] 527 / 2e-174 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10036783 [exp] 528 / 1e-173 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10009600 [exp] 264 / 3e-80 AT5G13010 907 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Lus10031647 [exp] 272 / 1e-78 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10005261 [exp] 235 / 3e-67 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10000874 [exp] 221 / 3e-66 AT5G13010 561 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Lus10033690 [exp] 219 / 5e-60 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10036991 [exp] 206 / 5e-57 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 204 / 1e-56 AT1G27900 1097 / 0.0 RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024400 [exp] 528 / 5e-174 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.012G034200 [exp] 526 / 7e-173 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 277 / 9e-81 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.010G172500 [exp] 278 / 2e-80 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.002G192500 [exp] 267 / 3e-79 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 261 / 5e-77 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 217 / 3e-61 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 203 / 4e-56 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 201 / 2e-55 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.017G050100 [exp] 149 / 7e-37 AT4G01020 1719 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10027147 pacid=23145464 polypeptide=Lus10027147 locus=Lus10027147.g ID=Lus10027147.BGIv1.0 annot-version=v1.0 ATGAGAGATGTTGACCAGAAAACCGGTGTTGACCTGGACAAGAAGAGCAATAGGATTGTGAAAGCGGAAGAAGATGATGATGATGATGCTATTCCAATTT GGAGGAGGATGAGTTCGCCGGAAATATGGGATGAGAAGCAGTTGATTGCTTCAGGTGTGAAAGAGTGTACTAATCCTATGTATGGTGATGAAGAAAAAGA ATTAGATGAGGAAGAGATTGAAATCTTCAAGAATCCGGAAGGGTCGTTAGTTCGTGCTGCTGCCCTTCAGTCTGCTCTTGCTAAGGAGAGTAGGGAAGTG CGGGAACAACAGGTAAGGAACATGGTTGATTCGATACCAAAGGATCTGAATCGACCTTGGGAAGATCCAATGCTGGATGTTGGCGAGAGACATCTGGCTC AGGAACTTAGGGGGGTTGGTGTGTCTGCTTCTGACATGCCTGAATGGAAGAAGGATGCTTATGGCAAGGCCTTAAAATTCGGGGAGAGGTCGAAACTATC GATTCCGGATCAGAGACGGAGTTTGCCTATTTACAGTTTGAAGGAGGAGTTGGTGCAGGCTGTTCATGACAATCAAGTTTTGGTTGTTATTGGCGAGACG GGTTCTGGCAAGACCACACAGGTAACACAGTATCTCGCTGAGGTGGGTTATACTACAAGAGGTAAGATTCGCTGCACGCAGCCCCGTAGGGTTGCAGGTA CGTCGGTAGCGAAACGTGTTTCTGAGGAGTTTGGTTGTCGTTTGGGAGAGGAAGTTGGATACGCCATTCGTTTCGAAGACTGTACTGGACCTGATACTGT CATTAAGTACATGACTGATGGAATGCTTCTTAGGGAGATTCTGATCGACGAGAACCTCTCTCAGTACTCGGTAATAATGCTTGACGAAGCTCACGAGAGA ACGATCCACACCGATGTTCTTTTTGGGCTTCTTAAGCCGTTGTTGAAGAGAAGGCCTGATCTTCGTCTGATTGTCACCTGTACTCTGGACGCCGAAAAGT TTTCTGCTTACTTCTTTAATTGCAACATATTCACCATTCCTGGAAGAACATTCCCTGTGGAGATTTTTTACACTAAGCAGCCTGAAAGTGATTACCTTAA CGCGATTCCCCCTACCTGCATTCCTGAGATCCAAAGAAGCAATCTTGGACTGGTGACACTTACAATGAAGGCCATGGGGATTAACGATCTTTTATTGTTC GATTTCATGGATCCTCCATCGTCTCAAGCCCTCATCTCTGCCTTGGAGCAGCTGTACAGTCTAGGGGCTTTGGATGAAGAAGGATTTCTGACCAAGCTAG GGAGGAAGATGGCCGAATTCCCGATGGAGCCTCCACTGTCGAAGATGCTACTGGCTAGTGTGGGCTTCGGATGCAGGGACGAGATTCTTACGATTATCAC TATGATCCAAACAGGTAATGTTTTTTACAGGCCGAGGGAAAAACAGGCTCAAGCTGATCAGAAGAAGGCCAAGTTCCTGCAACCCGAGGGAGACCATTTG ACGTTGCTTGCTGTCTACGAAGCATGGAAAGCGAACAACTACTCCGGACCGTGGTGCTTCGAGAATTTTGTACAGCATCGGTCGTTGAGGAGGGCGCAGG ACGTTAGAAAGCAGCTTTTAACCATCATGGACAAGCTTAAGCTGGAGGTGGTGAGCTGTCGGAAGAAGAAGAAGAAGAACGATTTCAGCGAGATAAGGAA ACCCATAGCAGCTGGCTTCTTCTTCCACGCAGCGAGGAAGGATTCCCAGGAGGGGGGTTATCGGACTTTGGTCGAGAACCAGCCGGTGCATATCCATCCC GGCAGCGCTCTTTTCCATAGACAGCCGGATTGGGTGGTCTACCATGAGCTGGTAATGACTACTAAGGAGTACATGCGCGAAGCTACGGTCATTGACCCCA AGTGGCTGGTAAAAATTGCTCCAAGTTTCTTCAAAGTCTCGCATCCGACGAATATGAGCAATCGCAAACGCCAGCAACGCATAGAGCCGCTGCATGATAG ATACAGCGAACCAAACTTGTGGCGGTTGACTAAACGCCGTGCTTGA
AA sequence Show only first row Show all	>Lus10027147 pacid=23145464 polypeptide=Lus10027147 locus=Lus10027147.g ID=Lus10027147.BGIv1.0 annot-version=v1.0 MRDVDQKTGVDLDKKSNRIVKAEEDDDDDAIPIWRRMSSPEIWDEKQLIASGVKECTNPMYGDEEKELDEEEIEIFKNPEGSLVRAAALQSALAKESREV REQQVRNMVDSIPKDLNRPWEDPMLDVGERHLAQELRGVGVSASDMPEWKKDAYGKALKFGERSKLSIPDQRRSLPIYSLKEELVQAVHDNQVLVVIGET GSGKTTQVTQYLAEVGYTTRGKIRCTQPRRVAGTSVAKRVSEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHER TIHTDVLFGLLKPLLKRRPDLRLIVTCTLDAEKFSAYFFNCNIFTIPGRTFPVEIFYTKQPESDYLNAIPPTCIPEIQRSNLGLVTLTMKAMGINDLLLF DFMDPPSSQALISALEQLYSLGALDEEGFLTKLGRKMAEFPMEPPLSKMLLASVGFGCRDEILTIITMIQTGNVFYRPREKQAQADQKKAKFLQPEGDHL TLLAVYEAWKANNYSGPWCFENFVQHRSLRRAQDVRKQLLTIMDKLKLEVVSCRKKKKKNDFSEIRKPIAAGFFFHAARKDSQEGGYRTLVENQPVHIHP GSALFHRQPDWVVYHELVMTTKEYMREATVIDPKWLVKIAPSFFKVSHPTNMSNRKRQQRIEPLHDRYSEPNLWRLTKRRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10027147 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10030995 [exp]	2.6	0.8787
AT3G60290			2-oxoglutarate (2OG) and Fe(II...		Lus10018950 [exp]	9.1	0.8003
					Lus10021406 [exp]	12.5	0.7935
					Lus10015849 [exp]	12.6	0.6602
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10005354 [exp]	13.1	0.7909
AT3G47570			Leucine-rich repeat protein ki...		Lus10016896 [exp]	15.3	0.7863
AT4G27290			S-locus lectin protein kinase ...		Lus10014813 [exp]	16.0	0.7878
					Lus10021407 [exp]	18.1	0.7833
AT5G05340			Peroxidase superfamily protein...		Lus10032786 [exp]	20.0	0.7772
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10038228 [exp]	21.9	0.7507

Compare expression of checked genes

Lus10027147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.