Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21870 195 / 4e-62 CYCP2;1 cyclin p2;1 (.1) AT2G44740 121 / 2e-33 CYCP4;1 cyclin p4;1 (.1) AT5G61650 110 / 5e-29 CYCP4;2 CYCLIN P4;2 (.1) AT5G07450 109 / 6e-29 CYCP4;3 cyclin p4;3 (.1) AT2G45080 103 / 2e-26 CYCP3;1 cyclin p3;1 (.1) AT3G05327 102 / 4e-26 Cyclin family protein (.1) AT3G60550 99 / 9e-25 CYCP3;2 cyclin p3;2 (.1) AT3G63120 87 / 2e-20 CYCP1;1 cyclin p1;1 (.1) AT3G26560 59 / 1e-09 ATP-dependent RNA helicase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039697 [exp] 353 / 3e-124 AT3G21870 236 / 3e-79 cyclin p2;1 (.1) Lus10032505 [exp] 118 / 5e-32 AT2G44740 228 / 7e-76 cyclin p4;1 (.1) Lus10043003 [exp] 117 / 2e-31 AT2G44740 227 / 2e-75 cyclin p4;1 (.1) Lus10042582 [exp] 115 / 9e-31 AT3G63120 191 / 2e-61 cyclin p1;1 (.1) Lus10022038 [exp] 114 / 2e-30 AT3G63120 197 / 8e-64 cyclin p1;1 (.1) Lus10029933 [exp] 108 / 1e-28 AT3G05327 172 / 3e-54 Cyclin family protein (.1) Lus10004475 [exp] 108 / 1e-28 AT3G05327 171 / 1e-53 Cyclin family protein (.1) Lus10042873 [exp] 104 / 1e-26 AT3G60550 300 / 8e-104 cyclin p3;2 (.1) Lus10028174 [exp] 89 / 3e-21 AT2G45080 249 / 1e-84 cyclin p3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121500 [exp] 219 / 3e-71 AT3G21870 228 / 5e-76 cyclin p2;1 (.1) Potri.014G050400 [exp] 124 / 1e-34 AT2G44740 285 / 8e-99 cyclin p4;1 (.1) Potri.012G114600 [exp] 122 / 9e-34 AT2G44740 277 / 2e-95 cyclin p4;1 (.1) Potri.015G112140 [exp] 116 / 1e-31 AT2G44740 274 / 1e-94 cyclin p4;1 (.1) Potri.002G052800 [exp] 112 / 2e-29 AT3G63120 219 / 1e-71 cyclin p1;1 (.1) Potri.013G023000 [exp] 109 / 7e-29 AT3G05327 194 / 4e-63 Cyclin family protein (.1) Potri.005G209800 [exp] 108 / 2e-28 AT3G63120 223 / 7e-74 cyclin p1;1 (.1) Potri.014G066400 [exp] 103 / 1e-26 AT3G60550 343 / 3e-121 cyclin p3;2 (.1) Potri.002G143400 [exp] 101 / 8e-26 AT2G45080 324 / 1e-113 cyclin p3;1 (.1) Potri.005G033600 [exp] 100 / 2e-25 AT3G05327 184 / 5e-59 Cyclin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF08613 [flax] [poplar] Cyclin Cyclin CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10027148 pacid=23145361 polypeptide=Lus10027148 locus=Lus10027148.g ID=Lus10027148.BGIv1.0 annot-version=v1.0 ATGTTAGCCACCGGCGACCTCACCACCGGCGACAACCGGAAATCATCCGACCAAGCGACGACGCCGAGAGTCCTGACCATACTATCCCATGTGCTGGAGA AGCTGGTGGCTAGAAACGACATGCTGCAGGTGGATTGGAACGTTAATGGTGGGAAATTAGGAGGATTGAATTCCTTCCATGGAGTTAGAGCTCCAAGTAT AACCATACTCAGCTACTTGGAGAGGCTGTACAAGTACACTGAATGCAGCCCTTCGTGCTTCGTGGTCGGTTATGTCTATATCGACCGGTTGATTCACAAG CACCCCGATTCTCTGCTGGTTTCACTCAATGTTCATCGTTTGCTGCTCACTTGTGTGCTTGTTGCTTCCAAGATGCTTGATGATGTGCACCAAAACAATG CGTTCTACGCAAGAGTAGGAGGAGTGAGCAATGCAGAACTGAACAAGCTTGAGATTGAGCTTCTCTTCCTCCTTGACTACGGACTCACCGTTACTTCTCG AGTTTTCGAGAGCTATTGCAACCACTTGGAGCAGGAAATGATGCTCACTGCCAATAATGGCGCCACTTCTTCTTCTTCTTCTTTGACTGACCATGATCCC GCCGCCGCCGCCATTAATGTTGAAGTGGTTTCTTTGTCCTCACCTTCAAGCGGCAGCAATGGCGCCGGAGCAATACTCCCTGCCTTGAGATCATTAGGCA GGGTTTCGAGTGTTATGAAGTGTGGTTGTTTCGTTCAATTGAATGGTTTCAATGGGGAAGAAGGTTTGGTTCATGCTTCTCGGATGAAGGATGGCGTTAG AATGGGACAAGAAGTTTACGTGAAGGTGATTTCTGGTTCTTAG
AA sequence Show only first row Show all	>Lus10027148 pacid=23145361 polypeptide=Lus10027148 locus=Lus10027148.g ID=Lus10027148.BGIv1.0 annot-version=v1.0 MLATGDLTTGDNRKSSDQATTPRVLTILSHVLEKLVARNDMLQVDWNVNGGKLGGLNSFHGVRAPSITILSYLERLYKYTECSPSCFVVGYVYIDRLIHK HPDSLLVSLNVHRLLLTCVLVASKMLDDVHQNNAFYARVGGVSNAELNKLEIELLFLLDYGLTVTSRVFESYCNHLEQEMMLTANNGATSSSSSLTDHDP AAAAINVEVVSLSSPSSGSNGAGAILPALRSLGRVSSVMKCGCFVQLNGFNGEEGLVHASRMKDGVRMGQEVYVKVISGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Lus10027148 [exp]	0	1
AT3G13480			unknown protein		Lus10010318 [exp]	2.8	0.8577
AT2G46690			SAUR-like auxin-responsive pro...		Lus10008845 [exp]	3.7	0.8480
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10006386 [exp]	4.0	0.8802
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10021839 [exp]	4.9	0.8779
AT1G16250			Galactose oxidase/kelch repeat...		Lus10013899 [exp]	5.4	0.8278
AT4G22950	MADS	AGL19	AGAMOUS-like 19 (.1)		Lus10006715 [exp]	6.3	0.8757
AT3G63540			Mog1/PsbP/DUF1795-like photosy...		Lus10016419 [exp]	7.2	0.8762
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10008702 [exp]	8.8	0.8488
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10029809 [exp]	10.4	0.8706
					Lus10018772 [exp]	12.2	0.8780

Compare expression of checked genes

Lus10027148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.