Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35730 611 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G32295 495 / 5e-172 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 77 / 1e-14 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) AT3G29060 76 / 4e-14 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 73 / 2e-13 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 71 / 1e-12 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G68740 70 / 2e-12 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 70 / 3e-12 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 66 / 4e-11 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 66 / 5e-11 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039696 [exp] 831 / 0 AT5G35730 689 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10031575 [exp] 669 / 0 AT5G35730 597 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10015099 [exp] 461 / 8e-159 AT5G35730 506 / 2e-178 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 82 / 4e-16 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10011799 [exp] 82 / 7e-16 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10021164 [exp] 81 / 1e-15 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10036781 [exp] 76 / 2e-14 AT1G14040 561 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10004285 [exp] 75 / 3e-14 AT1G69480 467 / 4e-160 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10034400 [exp] 75 / 6e-14 AT1G68740 1057 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121400 [exp] 702 / 0 AT5G35730 694 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G039000 [exp] 698 / 0 AT5G35730 691 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 81 / 8e-16 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G164900 [exp] 76 / 5e-14 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 74 / 2e-13 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 73 / 4e-13 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G169400 [exp] 71 / 1e-12 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G165300 [exp] 69 / 4e-12 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G110800 [exp] 68 / 1e-11 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 67 / 2e-11 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10027149 pacid=23145496 polypeptide=Lus10027149 locus=Lus10027149.g ID=Lus10027149.BGIv1.0 annot-version=v1.0 ATGTTCGGAGGTCAAGCGATACCGCCTGGGAATAGTCCGCATTTGAGGAAGTCTGGTAGCCGATCTGTTGTGTTTGATCTTGGTAGCAACAGAATGTCAA TTGGATTGTCTCAATTGCTTGCATCGAGCGGGGAGCTGGGAAATGGTGCGGAAGAAGGGTTCTTACATACAATAGAGTCCGATAGCTTGAAGATGCTTCC CATTGCTGCTGCTGCTGCCATAATGCCGTCTCCAGTGCTGTTATGGAGATTCAAGTTATCAGTGTGTGTTAAGTATACTGTAGACATGGCATTCGCGACT CATGTTGCTGCAGTTGTGCTTCGTTACGAATATCTTGATCATACTAGATTTGTTTCTTGTCAGGTGCTTCTGTTCTTCCTATGGGGTTTTGTTTGCTGTA AGATTGGATGGAGTTCTGTTATGAGAATGAGTGCAAACTTGCGGGACCTTTTTCTCTACGAGGTGTTCTTGTATTACAATCCTCTTCTTCTCGTGACATT GGCAGTTTGGTTTTGGGGTTCTAATTTGTGGGTCTTCTCCCAGTCAACTGTCAGTTATGCTAAGATTTTTGATCTTGACCAAAGCCATCTCACTCACAGA GAAATATGGAAGGTTGCAATGTGGATGACTATAGTTGTCCCAAGTAGCATGACGGCCTACCTCTATCTCTATTCCCATGGAGAAGTGTCGTTGGCAGCAT CACAACCAGTTCTACTCTACTGTGCTGTTGCAATGCTTCTGATATTCCCGTTTGATATATTCTACTTGTCAACACGCTACTACTTGCTAAGAACTCTATG GAGGATATTATTCCCTTTACAGGCAAGTAACCAGTTAGTCATAACATCGATAAGATTTGCATTTCATGGTTGGACCCTAATATTCTATAGATCTTCGGCA ATTTCATTTGCTGACTTCTTTGTGGCTGATATCTTAACCTCTATGTCAAAGGTCTTTTCAGATATGGAGCGTTCAGTTTGTCGAATGGTTCATCGCCAGG TGGCTACAATTGCATGGTTTGAAGCTGACTCTATCTGTGGCAGTCACTCCGTTGCAATCCCAATGGTTCTTGTTCTTCCTTACCTGTTTCGGTTATTCCA GTGCCTCCGACAATACAAGGATACGAAGGAGAAAACATCTCTTCTCAACGGTACGGGGGTTGCACTACTTTCTTTCGCTTCCATCCCTTTACCTTTGAAG TATTCAACAGCAGTACCAGTCATTTTCTTATCAGCGTTGAAGTATCACGTCTTCCCTGATAAATGGACAAACTTTTATCGTCCTCTCTGGCTTTTCTCAA GTGTCTTGAACTCTTTGTATTCCTTCTACTGGGATGTGACCCGAGATTGGGACATGAGTGGCTTCACTCGAATCTTCAAGTTCAACAGACCGAGTGTATG TTCATACATAATACACGGACGAACATGGGTTTACTTCTGGGTTATTGGAAGCAATCTGATCCTGCGTTGCACATGGACGTACAAGCTCTCGGCTCATTTG CGCCACAACTACCTGACCGTTTTCGCGATAACAGCGCTGGAAATCTTCAGGCGGTTCCAGTGGGTGTTCTTCCGGGTCGAGAACGAATGGAACAAGATGA ATGCCAAGTCAACCGCTCAGCTTGCACTGAGCGAGAAGTCAACAGAGGAAGAGAAGTCCAAGTTACTTGCCTCTAGTGATCATAATGTATAG
AA sequence Show only first row Show all	>Lus10027149 pacid=23145496 polypeptide=Lus10027149 locus=Lus10027149.g ID=Lus10027149.BGIv1.0 annot-version=v1.0 MFGGQAIPPGNSPHLRKSGSRSVVFDLGSNRMSIGLSQLLASSGELGNGAEEGFLHTIESDSLKMLPIAAAAAIMPSPVLLWRFKLSVCVKYTVDMAFAT HVAAVVLRYEYLDHTRFVSCQVLLFFLWGFVCCKIGWSSVMRMSANLRDLFLYEVFLYYNPLLLVTLAVWFWGSNLWVFSQSTVSYAKIFDLDQSHLTHR EIWKVAMWMTIVVPSSMTAYLYLYSHGEVSLAASQPVLLYCAVAMLLIFPFDIFYLSTRYYLLRTLWRILFPLQASNQLVITSIRFAFHGWTLIFYRSSA ISFADFFVADILTSMSKVFSDMERSVCRMVHRQVATIAWFEADSICGSHSVAIPMVLVLPYLFRLFQCLRQYKDTKEKTSLLNGTGVALLSFASIPLPLK YSTAVPVIFLSALKYHVFPDKWTNFYRPLWLFSSVLNSLYSFYWDVTRDWDMSGFTRIFKFNRPSVCSYIIHGRTWVYFWVIGSNLILRCTWTYKLSAHL RHNYLTVFAITALEIFRRFQWVFFRVENEWNKMNAKSTAQLALSEKSTEEEKSKLLASSDHNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10027149 [exp]	0	1
AT3G03810		EDA30	embryo sac development arrest ...		Lus10010654 [exp]	3.0	0.8352
AT2G38580			Mitochondrial ATP synthase D c...		Lus10025211 [exp]	3.9	0.8217
AT2G05590			TLD-domain containing nucleola...		Lus10014476 [exp]	4.9	0.8215
AT5G24760			GroES-like zinc-binding dehydr...		Lus10031319 [exp]	5.0	0.8597
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	6.9	0.8452
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10031687 [exp]	8.9	0.7999
AT4G18490			unknown protein		Lus10021779 [exp]	9.8	0.8310
AT3G06440			Galactosyltransferase family p...		Lus10032650 [exp]	10.6	0.8144
AT3G47570			Leucine-rich repeat protein ki...		Lus10037889 [exp]	13.2	0.7646
AT1G06470			Nucleotide/sugar transporter f...		Lus10031370 [exp]	19.3	0.7783

Compare expression of checked genes

Lus10027149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.