Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15248 97 / 5e-27 CO B-box type zinc finger family protein (.1) AT3G21890 86 / 1e-22 CO B-box type zinc finger family protein (.1) AT3G21150 69 / 3e-15 CO EIP6, BBX32 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) AT4G27310 63 / 6e-13 CO B-box type zinc finger family protein (.1) AT5G54470 63 / 6e-13 CO B-box type zinc finger family protein (.1) AT2G33500 57 / 2e-10 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT4G15250 54 / 1e-09 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT1G28050 54 / 2e-09 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT5G15850 54 / 3e-09 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT5G15840 53 / 4e-09 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039694 [exp] 176 / 3e-58 AT4G15248 108 / 1e-31 B-box type zinc finger family protein (.1) Lus10015097 [exp] 121 / 2e-36 AT4G15248 94 / 5e-26 B-box type zinc finger family protein (.1) Lus10031583 [exp] 115 / 2e-34 AT3G21890 96 / 1e-26 B-box type zinc finger family protein (.1) Lus10031593 [exp] 66 / 3e-14 AT4G27310 119 / 2e-33 B-box type zinc finger family protein (.1) Lus10033751 [exp] 66 / 5e-14 AT4G27310 114 / 9e-32 B-box type zinc finger family protein (.1) Lus10034830 [exp] 62 / 2e-12 AT3G21150 112 / 3e-30 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) Lus10033380 [exp] 60 / 1e-11 AT3G21150 112 / 3e-30 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) Lus10018513 [exp] 59 / 4e-11 AT4G27310 117 / 3e-32 B-box type zinc finger family protein (.1) Lus10039727 [exp] 58 / 5e-11 AT5G54470 118 / 1e-32 B-box type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121100 [exp] 122 / 5e-37 AT4G15248 108 / 2e-31 B-box type zinc finger family protein (.1) Potri.017G039400 [exp] 107 / 5e-31 AT4G15248 100 / 3e-28 B-box type zinc finger family protein (.1) Potri.013G150500 [exp] 66 / 6e-14 AT4G27310 114 / 1e-31 B-box type zinc finger family protein (.1) Potri.011G125400 [exp] 65 / 3e-13 AT5G54470 120 / 1e-32 B-box type zinc finger family protein (.1) Potri.001G414700 [exp] 64 / 3e-13 AT5G54470 126 / 2e-35 B-box type zinc finger family protein (.1) Potri.004G027100 [exp] 61 / 6e-13 AT5G54470 97 / 4e-26 B-box type zinc finger family protein (.1) Potri.004G026900 [exp] 59 / 7e-12 AT4G27310 109 / 2e-30 B-box type zinc finger family protein (.1) Potri.008G007000 [exp] 60 / 1e-11 AT3G21150 128 / 3e-36 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) Potri.011G039700 [exp] 59 / 2e-11 AT4G27310 105 / 3e-28 B-box type zinc finger family protein (.1) Potri.010G251800 [exp] 58 / 7e-11 AT3G21150 130 / 5e-37 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [flax] [poplar] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Lus10027151 pacid=23145553 polypeptide=Lus10027151 locus=Lus10027151.g ID=Lus10027151.BGIv1.0 annot-version=v1.0 ATGTGCAGAGGTGTGCAAAGCCAGAAGGGCTGTGATGAACATGATGCAGAGGTTGCTTCAGCGGCAAGTAGCAGGGTTTCGGTAGGGTGTGAGCTGTGTG GAGAGAAGGCAACGTTGTACTGCCAGGCGGATGATGCGTATCTGTGTCGAAAATGTGATAGATGGGTTCATGGTGCTAATTTCTTGGCTTTGAGGCATAT TAGGTGTTTGTTGTGTGATACTTGCCAAGGGTTTACTCAGAGGTACTTGGTTGGTGCTTCCATGGAGGTTCTGCTTCCAACCCTTCCGATGAAGACCTTT GAGCAGTGCATCAGTTCTGATGATGATGGTGGTGAAGAAGAATTGGATTCGGATTCGGTTAAACTTCCGTTTCTGTTCCTGTAG
AA sequence Show only first row Show all	>Lus10027151 pacid=23145553 polypeptide=Lus10027151 locus=Lus10027151.g ID=Lus10027151.BGIv1.0 annot-version=v1.0 MCRGVQSQKGCDEHDAEVASAASSRVSVGCELCGEKATLYCQADDAYLCRKCDRWVHGANFLALRHIRCLLCDTCQGFTQRYLVGASMEVLLPTLPMKTF EQCISSDDDGGEEELDSDSVKLPFLFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15248	CO		B-box type zinc finger family ...		Lus10027151 [exp]	0	1
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10033380 [exp]	1.0	0.9622
AT4G14690		ELIP2	EARLY LIGHT-INDUCIBLE PROTEIN ...		Lus10039379 [exp]	1.4	0.9574
					Lus10021347 [exp]	2.8	0.9165
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10008007 [exp]	3.2	0.9131
AT5G62140			unknown protein		Lus10015008 [exp]	3.5	0.9240
AT5G66400		ATDI8, RAB18	RESPONSIVE TO ABA 18, ARABIDOP...		Lus10017977 [exp]	4.0	0.9056
AT3G52105			unknown protein		Lus10012208 [exp]	4.2	0.9066
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10000906 [exp]	5.3	0.9058
AT3G52740			unknown protein		Lus10021366 [exp]	8.5	0.8902
					Lus10026705 [exp]	10.4	0.8577

Compare expression of checked genes

Lus10027151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.