Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15240 417 / 1e-142 Protein of unknown function (DUF604) (.1) AT1G05280 281 / 1e-89 Protein of unknown function (DUF604) (.1) AT5G41460 258 / 3e-80 Protein of unknown function (DUF604) (.1) AT2G37730 257 / 1e-79 Protein of unknown function (DUF604) (.1) AT4G11350 252 / 4e-78 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT4G23490 249 / 1e-76 Protein of unknown function (DUF604) (.1) AT1G01570 242 / 1e-74 Protein of unknown function (DUF604) (.1) AT1G07850 234 / 4e-71 Protein of unknown function (DUF604) (.1) AT3G11420 230 / 8e-70 Protein of unknown function (DUF604) (.1) AT1G33250 226 / 6e-68 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039693 [exp] 696 / 0 AT4G15240 495 / 1e-173 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 347 / 4e-115 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 308 / 3e-100 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 265 / 1e-82 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10032293 [exp] 249 / 6e-77 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 248 / 5e-76 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 228 / 7e-69 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10009957 [exp] 220 / 4e-66 AT5G12460 439 / 3e-151 Protein of unknown function (DUF604) (.1) Lus10008293 [exp] 220 / 1e-65 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G039500 [exp] 486 / 2e-169 AT4G15240 491 / 9e-171 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 362 / 5e-121 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 256 / 2e-79 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 254 / 6e-79 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 253 / 2e-78 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 251 / 7e-78 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 242 / 2e-74 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 241 / 6e-74 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 239 / 3e-73 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.001G256200 [exp] 236 / 4e-72 AT5G12460 444 / 2e-153 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10027152 pacid=23145495 polypeptide=Lus10027152 locus=Lus10027152.g ID=Lus10027152.BGIv1.0 annot-version=v1.0 ATGCCACTGATCAGGAACCTAACCGTAACTCCTACTCGCCTGAAGGACATCATCCTCCTCTTCTCCCTCCTCGCCATAATCCACCTCACATTCCGCAACC CTCCTCCCCAACCTCCGCCGCACCCCTCCGATTTCGCCACCTCCGTCGTCCCCACAGCTCGCCGCCACATCCTCTTCTCCATCGCGTCGTCAGAAGGCTC CTTCCTCCGCCGGAAGCCGTACATTTGCCTCTGGTACGAGCCCAACGCCACTCGCGCCTTCGCTTTCCTGGACTCGCACCTGCCCGATGACGACGACGAC GATCTCGCATCCGATCTCCCTCCCGTGATCGTCTCCGAGGACACTTCTAGGTTCCCCTACACCTTCAAGGGCGGGCTGAGGTCGGCGATCCGCGTGGCGC GGGTCGTGAAGGAGGCGGTGGAGCTGAACGAGACCGGAGTGAGGTGGTTTGTGTTTGGGGATGATGACACGGTGTTTTTCGTGGATAATTTGATCGATAC GCTGTCGAAGTACGATCACACGCGGTGGCTTTACATTGGGAGTAATTCCGAGAGCTATGAGCAGAATTTAAACTATGCGTTTGGTATGGGGTTTGGTGGA GGTGGATTCGCCATCAGTTATCCGTTGGCCAGGGCTTTGGCTAGGGTTCTGGATTCCTGTTTGGTTCGTTACTCGCATTTGTACGGCAGTGATGCTAGGC TTTTCTCCTGCTTGGCTGAATTAGGCGTTGGATTGACTCACGAGCTTGGCTTCCACCAGGTTGATTTGCGGGGGAATTTGTTTGGCTTTCTTTCAGCTCA TCCATTATCGCCATTGGTATCTCTTCATCATTTGGATGCTGCAAACCCACTGTTCCCCACCATGAACAGAACTGAAGCTATGGAACATCTTTTCAAGGCT GTGAGTGTTGATCCCGCTAGGATCTTGCAGCAGGTCGTATGTTATGATCACACCAATTCCTTTACTATTTCGATCGCATGGGGCTACTCGATTCAGGTGT TTGAGGGGAACGAGCTTCTTCCAGATCTCCTTAAGCTACACGAAACCTTCGCTCCATGGAGGAGACATCGAAATGCAATCGCTAAATACTACATGTTTAA CATGAGAGACTACCCTAGAGATCAATGTAAAAGGCCAGCTGTTTTCTTTATGCGAAATGTTATATCCAGTGAAGATGGCATTCGGAGCAGTTACACTAGG CACAATGTTGAGGAATGCACAACGGCTTCTAGGGCTATGAAAAATCTGAAGTACATCACGGTGTGGTCAGAGAAACTAAAGCTTGATGTCGATCAGCTTA GGGCTCCCCGTCGGCAATGTGGTGATGTTTCGTCATCGTCTGAGAAATCAATTTTTGTCAGAATCAGACAGTGCGGCAACAATGAACTAATTGCCATGCA TCCCTAG
AA sequence Show only first row Show all	>Lus10027152 pacid=23145495 polypeptide=Lus10027152 locus=Lus10027152.g ID=Lus10027152.BGIv1.0 annot-version=v1.0 MPLIRNLTVTPTRLKDIILLFSLLAIIHLTFRNPPPQPPPHPSDFATSVVPTARRHILFSIASSEGSFLRRKPYICLWYEPNATRAFAFLDSHLPDDDDD DLASDLPPVIVSEDTSRFPYTFKGGLRSAIRVARVVKEAVELNETGVRWFVFGDDDTVFFVDNLIDTLSKYDHTRWLYIGSNSESYEQNLNYAFGMGFGG GGFAISYPLARALARVLDSCLVRYSHLYGSDARLFSCLAELGVGLTHELGFHQVDLRGNLFGFLSAHPLSPLVSLHHLDAANPLFPTMNRTEAMEHLFKA VSVDPARILQQVVCYDHTNSFTISIAWGYSIQVFEGNELLPDLLKLHETFAPWRRHRNAIAKYYMFNMRDYPRDQCKRPAVFFMRNVISSEDGIRSSYTR HNVEECTTASRAMKNLKYITVWSEKLKLDVDQLRAPRRQCGDVSSSSEKSIFVRIRQCGNNELIAMHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15240			Protein of unknown function (D...		Lus10027152 [exp]	0	1
AT3G62010			unknown protein		Lus10009251 [exp]	2.0	0.8674
AT5G24810			ABC1 family protein (.1.2)		Lus10026971 [exp]	3.5	0.8248
AT5G13260			unknown protein		Lus10002574 [exp]	3.7	0.8433
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10022368 [exp]	5.8	0.8596
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10025995 [exp]	6.0	0.8539
AT5G13260			unknown protein		Lus10001801 [exp]	7.7	0.8490
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10013044 [exp]	7.9	0.8539
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10005319 [exp]	10.7	0.8503
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10017640 [exp]	15.9	0.8117
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10028147 [exp]	16.7	0.8401

Compare expression of checked genes

Lus10027152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.