Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05280 472 / 3e-164 Protein of unknown function (DUF604) (.1) AT4G15240 452 / 9e-156 Protein of unknown function (DUF604) (.1) AT1G01570 390 / 9e-132 Protein of unknown function (DUF604) (.1) AT5G41460 382 / 4e-128 Protein of unknown function (DUF604) (.1) AT4G23490 375 / 3e-125 Protein of unknown function (DUF604) (.1) AT4G11350 374 / 5e-125 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT1G07850 348 / 1e-114 Protein of unknown function (DUF604) (.1) AT2G37730 347 / 2e-114 Protein of unknown function (DUF604) (.1) AT3G11420 330 / 7e-108 Protein of unknown function (DUF604) (.1) AT4G00300 332 / 1e-105 fringe-related protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039692 [exp] 785 / 0 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10027152 [exp] 407 / 3e-138 AT4G15240 521 / 0.0 Protein of unknown function (DUF604) (.1) Lus10039693 [exp] 391 / 9e-133 AT4G15240 495 / 1e-173 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 371 / 2e-123 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 371 / 2e-123 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 369 / 9e-123 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 343 / 1e-112 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10002713 [exp] 327 / 4e-107 AT3G11420 460 / 5e-159 Protein of unknown function (DUF604) (.1) Lus10008293 [exp] 313 / 5e-101 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G039600 [exp] 652 / 0 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.017G039500 [exp] 427 / 4e-146 AT4G15240 491 / 9e-171 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 387 / 3e-130 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 385 / 2e-129 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 382 / 3e-128 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 369 / 3e-123 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 350 / 8e-116 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 347 / 2e-114 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 332 / 7e-109 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 324 / 8e-106 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10027153 pacid=23145416 polypeptide=Lus10027153 locus=Lus10027153.g ID=Lus10027153.BGIv1.0 annot-version=v1.0 ATGCAATTGTTTCGTTCATCAACTTCTGCTTCTTCTAAGTGCAGTTCTTCCACACGCTTAATAACCTTCATAATTTTCTCATCATCTATTTTCATTGTCT ATATTCTGGTGTCAGTGTTCCTAGTTGGTTCTTCCAGCTTCACAGGTGTGGCTTCTTCCTGGGAAAGAATTAGTGGCAGTTCATCATCCTATTCACAGTC AGCTACGAAGCTCGAGCACATCGTCTTCGGGATAGCTTCCAACAAGAAATCGTGGCTGAACCGGAAGGAGTATGTCAAGCTGTGGTGGAAGCCTCAGCAG ATGAAGGGATGTGTGTTCCTCGAGACTCTGCTCGATGATCATGACCGAAACTTCAGCACTGATAACTCTTCCCTGCCTCCTGTCTGCATCTCCGAGGACA CCTCGAGGTTCCGGTACACTTTCAAGAAAGGTCTCAGGTCGGCTATTCGAGTTGCTCGGGTGGTCTCCGAGACTGTGGCGCTCAACCATACTGATGTCAG GTGGTTTGTGTTTGGGGACGATGACACGGTTTTCTTCCCGGAGAACTTGGTGAAGACACTTTCGAAGTATGATCATAGGCTTTGGTACTACATTGGGTCT AACTCGGAGATTTACGAGCAGAACAGGCTGTTTGGTTTCGACATGGCTTATGGCGGAGCAGGATTCGCGATAAGCTATCCGCTGGCTAAAATTTTGGCTA AGGTTCTTGATTCTTGTATAGAGAGGTATCACCATCTCTATGGAAGTGATTCTAGAGTGTCTTCTTGCTTGGCTGAGCTTGGTGTGACATTAACTAAAGA GCCCGGTTTCCATCAGCTCGATTTTCATGGCGATGTTTTTGGTCTATTGACTTCACATCCAACGGTGCCGGTAGTGTCTCTCCACCACATGGGTCACATA GGACCGATCTTCCCCAACATGACGACTCGAGATTCCGTGCAACATCTGCTGACCGCAGCAGCTGTCGATTCACAGAGGGTCCTGCAGAAGACCGTCTGCT ACGACCGTTGGTTCTCATGGACCATATCAGTGGCGTGGGGGTACGCAGTCGAGGTCTACGGGAGCCACATTCTCCTCCCCGATGTACTCCCTACCGAAAC GACATTCAAGCAATGGAGCAAAGGAAGTGTGCTTGCCGGAACATATGTTTTCAACACTCGACTGCCTCATCCCGATCCGTGCAAGAGAGCCACAGTTTTC TTTATGGACCGTACCGCCACTTCTTCTGACGGGGAAAGCAAGATCGTTACCAGCCACTACACGAAAGCCTACGCTAATTGCTCGGAGGACTTGGCTTCAC CCAGAAGACTTGAAGAGATTAAGGTGTTTTCTCGCAAGCTTGACCTCAGTGATGCACAGCTGCAGGCCCCAAGGAGGCAGTGTTGTGATGTTTTGCCTTC ATCTGCTAACAGAGTGATGGAGATTGAAGTTAGGGAATGCAAAGATGATGAATTGATTCACATGCATAGGTAA
AA sequence Show only first row Show all	>Lus10027153 pacid=23145416 polypeptide=Lus10027153 locus=Lus10027153.g ID=Lus10027153.BGIv1.0 annot-version=v1.0 MQLFRSSTSASSKCSSSTRLITFIIFSSSIFIVYILVSVFLVGSSSFTGVASSWERISGSSSSYSQSATKLEHIVFGIASNKKSWLNRKEYVKLWWKPQQ MKGCVFLETLLDDHDRNFSTDNSSLPPVCISEDTSRFRYTFKKGLRSAIRVARVVSETVALNHTDVRWFVFGDDDTVFFPENLVKTLSKYDHRLWYYIGS NSEIYEQNRLFGFDMAYGGAGFAISYPLAKILAKVLDSCIERYHHLYGSDSRVSSCLAELGVTLTKEPGFHQLDFHGDVFGLLTSHPTVPVVSLHHMGHI GPIFPNMTTRDSVQHLLTAAAVDSQRVLQKTVCYDRWFSWTISVAWGYAVEVYGSHILLPDVLPTETTFKQWSKGSVLAGTYVFNTRLPHPDPCKRATVF FMDRTATSSDGESKIVTSHYTKAYANCSEDLASPRRLEEIKVFSRKLDLSDAQLQAPRRQCCDVLPSSANRVMEIEVRECKDDELIHMHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05280			Protein of unknown function (D...		Lus10027153 [exp]	0	1
AT4G16650			O-fucosyltransferase family pr...		Lus10028957 [exp]	4.9	0.7101
AT2G47160		AtBOR1, BOR1	REQUIRES HIGH BORON 1, HCO3- t...		Lus10043101 [exp]	7.3	0.7204
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021977 [exp]	8.9	0.6815
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10042514 [exp]	9.6	0.6899
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10030737 [exp]	11.3	0.6155
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10034863 [exp]	19.3	0.6307
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10040349 [exp]	21.2	0.6612
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019759 [exp]	22.2	0.6071
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10001076 [exp]	22.2	0.7049
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	27.9	0.6688

Compare expression of checked genes

Lus10027153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.