Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54690 168 / 8e-55 HTA3 ,G-H2AX ,GAMMA-H2AX ,H2AXB histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) AT1G08880 167 / 2e-54 HTA5 ,G-H2AX ,GAMMA-H2AX ,H2AXA histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) AT4G27230 152 / 2e-48 HTA2 histone H2A 2 (.1.2) AT5G54640 152 / 2e-48 ATHTA1, HTA1, RAT5 RESISTANT TO AGROBACTERIUM TRANSFORMATION 5, histone H2A 1, Histone superfamily protein (.1) AT1G51060 149 / 4e-47 HTA10 histone H2A 10 (.1) AT3G20670 145 / 7e-46 HTA13 histone H2A 13 (.1) AT5G59870 126 / 6e-38 HTA6 histone H2A 6 (.1) AT5G02560 122 / 3e-36 HTA12 histone H2A 12 (.1.2) AT5G27670 119 / 2e-35 HTA7 histone H2A 7 (.1) AT1G52740 82 / 1e-20 HTA9 histone H2A protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039691 [exp] 184 / 9e-61 AT1G54690 249 / 1e-86 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10002253 [exp] 177 / 4e-58 AT1G54690 244 / 9e-85 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10042960 [exp] 160 / 2e-51 AT1G51060 243 / 2e-84 histone H2A 10 (.1) Lus10003750 [exp] 160 / 2e-51 AT1G54690 239 / 7e-83 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10028044 [exp] 158 / 1e-50 AT1G08880 238 / 4e-82 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Lus10032464 [exp] 158 / 1e-50 AT1G51060 240 / 2e-83 histone H2A 10 (.1) Lus10004945 [exp] 126 / 6e-38 AT5G02560 233 / 5e-80 histone H2A 12 (.1.2) Lus10040853 [exp] 125 / 1e-37 AT5G02560 228 / 4e-78 histone H2A 12 (.1.2) Lus10005892 [exp] 125 / 1e-37 AT5G02560 230 / 1e-78 histone H2A 12 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028900 [exp] 174 / 4e-57 AT1G54690 220 / 4e-75 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Potri.005G040800 [exp] 174 / 4e-57 AT1G54690 221 / 2e-75 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Potri.005G040700 [exp] 165 / 2e-53 AT1G08880 183 / 2e-60 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Potri.011G131400 [exp] 152 / 1e-48 AT1G51060 200 / 1e-67 histone H2A 10 (.1) Potri.001G415700 [exp] 153 / 2e-48 AT1G51060 174 / 1e-56 histone H2A 10 (.1) Potri.013G028800 [exp] 151 / 4e-48 AT1G08880 190 / 2e-63 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Potri.004G031300 [exp] 148 / 5e-47 AT1G08880 150 / 6e-48 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Potri.006G082300 [exp] 125 / 1e-37 AT5G02560 143 / 2e-44 histone H2A 12 (.1.2) Potri.013G018200 [exp] 123 / 8e-37 AT5G27670 160 / 4e-51 histone H2A 7 (.1) Potri.005G026500 [exp] 122 / 2e-36 AT5G27670 145 / 2e-45 histone H2A 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00125 [flax] [poplar] Histone Core histone H2A/H2B/H3/H4
Representative CDS sequence Show only first row Show all	>Lus10027154 pacid=23145402 polypeptide=Lus10027154 locus=Lus10027154.g ID=Lus10027154.BGIv1.0 annot-version=v1.0 ATGAGTTCCGCCGCAGGATCAACGAAAGGAGGCCGAGGCAAGGCCAAGGCTGCGAAATCCGTATCCAGATCATCCAAGGCCGGACTGCAGTTCCCCGTCG GAAGAATCGCTAGGTTCCTCAAAGCAGGGAAATACGCCGAGCGTGTTGGCGCCGGTGCTCCAGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCTGCCGA GGTATTGGAACTTGCTGGAAACGCTGCGAGGGATAACAAGAAGAACCGGATCGTGCCGAGGCACATCCAATTGGCGGTGAGGAACGATGAGGAACTGAGC AAGCTTTTGGGATCGGTGACGATCGCCAACGGAGGCGTTCTTCCAAACATCCACAATACTCTCCTCCCGAAGAAGGCCGGAGGGAAGGGCGATATCGGAT CTGCTTCTCAAGAGTTTTGA
AA sequence Show only first row Show all	>Lus10027154 pacid=23145402 polypeptide=Lus10027154 locus=Lus10027154.g ID=Lus10027154.BGIv1.0 annot-version=v1.0 MSSAAGSTKGGRGKAKAAKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS KLLGSVTIANGGVLPNIHNTLLPKKAGGKGDIGSASQEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10027154 [exp]	0	1
AT3G12390			Nascent polypeptide-associated...		Lus10024109 [exp]	2.0	0.9349
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10042966 [exp]	13.7	0.9164
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10030540 [exp]	15.7	0.9079
AT2G40290			Eukaryotic translation initiat...		Lus10017435 [exp]	18.7	0.9113
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005883 [exp]	21.0	0.9046
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007619 [exp]	22.3	0.9059
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	23.0	0.9091
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	25.4	0.9099
AT3G05130			unknown protein		Lus10000927 [exp]	26.7	0.9069
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10026904 [exp]	27.6	0.9037

Compare expression of checked genes

Lus10027154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.