Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21865 274 / 4e-89 PEX22 peroxin 22 (.1) AT4G24220 63 / 2e-10 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, AWI31, VEP1 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G58750 52 / 5e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039690 [exp] 378 / 9e-130 AT3G21865 349 / 7e-122 peroxin 22 (.1) Lus10015100 [exp] 298 / 3e-98 AT3G21865 319 / 1e-109 peroxin 22 (.1) Lus10031575 [exp] 266 / 2e-80 AT5G35730 597 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10039688 [exp] 179 / 2e-53 AT4G24220 97 / 1e-23 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039689 [exp] 149 / 3e-40 AT4G24220 305 / 4e-101 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039687 [exp] 139 / 3e-36 AT4G24220 271 / 8e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039686 [exp] 130 / 2e-33 AT4G24220 302 / 5e-100 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10027156 [exp] 102 / 1e-25 AT4G24220 79 / 4e-18 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10032854 [exp] 72 / 3e-13 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G038800 [exp] 286 / 4e-94 AT3G21865 320 / 2e-110 peroxin 22 (.1) Potri.007G121600 [exp] 286 / 1e-93 AT3G21865 322 / 4e-111 peroxin 22 (.1) Potri.017G030700 [exp] 124 / 2e-31 AT4G24220 292 / 2e-96 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030400 [exp] 122 / 2e-30 AT4G24220 249 / 6e-80 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030600 [exp] 117 / 9e-29 AT4G24220 271 / 4e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019400 [exp] 72 / 2e-13 AT4G24220 544 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019500 [exp] 72 / 2e-13 AT4G24220 541 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G134500 [exp] 71 / 4e-13 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019300 [exp] 69 / 2e-12 AT4G24220 560 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019600 [exp] 66 / 2e-11 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027155 pacid=23145575 polypeptide=Lus10027155 locus=Lus10027155.g ID=Lus10027155.BGIv1.0 annot-version=v1.0 ATGGCTGAGTCATCGAAGGAAGAGCTCTTGCAGCTGATCAAGAGGTTCGGAGCTTATTTGAGCGTCAAGATGTCGACTTTCCTCCCGATCTCACTCCGTA ATCTGGATCCAAGGTCTGCTGGGGCCATAGCAGGACTTGCTCTGGCTGTGGTTTTCACTTGGAGAATGTTGAGGTCACCTAGTGCACCCCCGAGAAGGCA ACCACCGAAAAGAGATAATCCTTCAACTAGTACTTCTTCTGCTAACAGAGAATCGAATGTGGCATCTGTTGCCTCTGGAGCTTGTTCATCTTCAGAGGAT TTGAGAGCTCAGAATGTTGTAGATGAGTTCTTCCAGCCTGTTAAACCAACTGTGGGGCAAGTAGTGAGGCAAAAGTTGAGTGAAGGCAGAAAGGTCACTT GCCGTTTAGTTGGGGTAGTTCTTGAAGAAAGTACTCCAGAAGAGCTTCAGAAACAAGCAACCGTGAAATCCTCTGTTCTGGAAGTATTGTTGGAGATCAC CAAATTTTGTGATCTTTACCTAATGGAAAGAGTTCTTGATGATGAAACTGAACAAAGAGTACTTACTGCCTTGGAGAGTGCGGGAGTTTTCACCTCTGGT GGTTTGGTCAAAGACAAGGTTCTCTTCTGTAGCACAGAAACCGGGCGTACATCTTTCGTTCGGCAGCTCGAGCCAGACTGGCACATCGACAGCAGTCCTG AAATCGTCACTCAATTAGCTGTAATATTTCTGCAAACCGCACATCTCAATATTTCATCCGATGACATCTCTTTTTGCATCACAATACCTGTTATTTTCCT CATTTTTGCAGAGGTTTATCAAGTATCAACTCCACATCTCTCCTATAAAGCTCGAACGGTCACCTGGAAACGTTGTCCACTCTCCGTCACTGGAACACTT CTTCGGATTAAAACAAGAAGAAGAGGCGAACATCGTGCTAGCTCGCACGAGATGACCGCTAGTTGGCCATCAGCGATCTTTCTGAGGTTTCAAGAAAGGA ATGCTCGTCAAAGTGTTGCAATAACCCATAAACCCGAACTCTCTGCTCTTGTTCATACTACAGACATGCTGGAACTCGAAATGCATAACCGTCGCAAACG CATCGAAGCACGTAACATAAGGCCGCTTAGTCTTCACCAACCCATACTTCTCCACAATCTCATCCCAAACCGGGACATATTCACGGGGAAGGAGTTGTGG AGGGTCTTCTGTTCGGAGTTTGAGTTGGAGGATCATGGTGGGTTTGATGTGGCTAAGATGATGAACGATGGGATGGGAGATGTTTGGGATGAGATTGTGG AGAAGTATAGGTTGGTGAAGACTAATTTGGATGATGTTACACGCTTTGAAGCTTTCCGTCCGGTTACGAATCTCAAGTTCCAGCATGTTTGCAGTATGAA CAAGAGTCGAGAGTTCGGGTTTTCGGGTTATTGTAACACGTTGAAGAGCGTTCGTTACTGGATCAAGAGGATGAGGGAAATGAAGATCATACCTTAG
AA sequence Show only first row Show all	>Lus10027155 pacid=23145575 polypeptide=Lus10027155 locus=Lus10027155.g ID=Lus10027155.BGIv1.0 annot-version=v1.0 MAESSKEELLQLIKRFGAYLSVKMSTFLPISLRNLDPRSAGAIAGLALAVVFTWRMLRSPSAPPRRQPPKRDNPSTSTSSANRESNVASVASGACSSSED LRAQNVVDEFFQPVKPTVGQVVRQKLSEGRKVTCRLVGVVLEESTPEELQKQATVKSSVLEVLLEITKFCDLYLMERVLDDETEQRVLTALESAGVFTSG GLVKDKVLFCSTETGRTSFVRQLEPDWHIDSSPEIVTQLAVIFLQTAHLNISSDDISFCITIPVIFLIFAEVYQVSTPHLSYKARTVTWKRCPLSVTGTL LRIKTRRRGEHRASSHEMTASWPSAIFLRFQERNARQSVAITHKPELSALVHTTDMLELEMHNRRKRIEARNIRPLSLHQPILLHNLIPNRDIFTGKELW RVFCSEFELEDHGGFDVAKMMNDGMGDVWDEIVEKYRLVKTNLDDVTRFEAFRPVTNLKFQHVCSMNKSREFGFSGYCNTLKSVRYWIKRMREMKIIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21865		PEX22	peroxin 22 (.1)		Lus10027155 [exp]	0	1
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	8.3	0.9423
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10013300 [exp]	12.6	0.9406
					Lus10005731 [exp]	13.7	0.9038
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	15.2	0.9317
AT4G39230			NmrA-like negative transcripti...		Lus10026350 [exp]	16.5	0.8840
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10008170 [exp]	21.4	0.9258
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Lus10027904 [exp]	23.1	0.9294
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	30.4	0.8846
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10014463 [exp]	30.6	0.9200
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10022463 [exp]	31.4	0.9152

Compare expression of checked genes

Lus10027155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.