Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24220 71 / 4e-15 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, AWI31, VEP1 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G58750 39 / 0.0004 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039687 [exp] 179 / 1e-55 AT4G24220 271 / 8e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039688 [exp] 139 / 3e-42 AT4G24220 97 / 1e-23 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039689 [exp] 142 / 8e-42 AT4G24220 305 / 4e-101 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039686 [exp] 135 / 3e-39 AT4G24220 302 / 5e-100 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10027155 [exp] 101 / 6e-26 AT3G21865 310 / 6e-103 peroxin 22 (.1) Lus10018704 [exp] 70 / 1e-14 AT4G24220 530 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000076 [exp] 67 / 5e-14 AT4G24220 394 / 3e-138 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018705 [exp] 68 / 7e-14 AT4G24220 590 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10032854 [exp] 67 / 8e-14 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G030400 [exp] 133 / 2e-38 AT4G24220 249 / 6e-80 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030600 [exp] 131 / 1e-37 AT4G24220 271 / 4e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030700 [exp] 129 / 9e-37 AT4G24220 292 / 2e-96 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G134500 [exp] 71 / 5e-15 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019500 [exp] 69 / 1e-14 AT4G24220 541 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019400 [exp] 69 / 2e-14 AT4G24220 544 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019700 [exp] 66 / 2e-13 AT4G24220 556 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120700 [exp] 66 / 2e-13 AT4G24220 569 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019300 [exp] 66 / 3e-13 AT4G24220 560 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120600 [exp] 63 / 3e-12 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027156 pacid=23145492 polypeptide=Lus10027156 locus=Lus10027156.g ID=Lus10027156.BGIv1.0 annot-version=v1.0 ATGTCCTATGCGAGCCTGTTGGCCGAGCAACAGATATGGGCTGCCAAGAACGAGGAGGCTAGGAACCAATCGTTCAATTGTACGAACAGGGACATATTCA CGGGGAAGGAGTTGTGGATGGTGCTCTGTCAGGAGTTCGAGTTGGAGTTCAACGAAGAGTTGGAGGGGGAAATATTCAAGTTTGATGTGGTAGGAATGGG AGATGTGTGGGATGACATTGTGGACAAGTATGGGTTGGTGAAGACTAAGTTGGAAGAGGTTACTTGTTTTGATGTGTTGGTGGCGAGTAGGGATTTCGAG TACCAGACCGTTTGTAGCATGAACAAGAGTAGGGAGTTCAGGTTTTTGGGGTTTTGCGACACGATGAAGAACGTTCGGAAAGATGAGGGAGATGAAGATC ATACCTTAGAAATACTACTCTGA
AA sequence Show only first row Show all	>Lus10027156 pacid=23145492 polypeptide=Lus10027156 locus=Lus10027156.g ID=Lus10027156.BGIv1.0 annot-version=v1.0 MSYASLLAEQQIWAAKNEEARNQSFNCTNRDIFTGKELWMVLCQEFELEFNEELEGEIFKFDVVGMGDVWDDIVDKYGLVKTKLEEVTCFDVLVASRDFE YQTVCSMNKSREFRFLGFCDTMKNVRKDEGDEDHTLEILL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10027156 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10035637 [exp]	7.7	0.7168
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023974 [exp]	11.4	0.7048
AT3G61660			unknown protein		Lus10032366 [exp]	13.0	0.6828
AT3G45740			hydrolase family protein / HAD...		Lus10040363 [exp]	13.2	0.7148
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	14.1	0.6996
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10012444 [exp]	16.0	0.7038
					Lus10021851 [exp]	22.6	0.6991
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	24.4	0.6991
					Lus10012440 [exp]	26.1	0.6991
AT3G44160			Outer membrane OMP85 family pr...		Lus10004104 [exp]	26.3	0.6989

Compare expression of checked genes

Lus10027156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.