Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77180 447 / 1e-154 SKIP chromatin protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039685 [exp] 601 / 0 AT1G77180 826 / 0.0 chromatin protein family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G163700 [exp] 492 / 7e-171 AT1G77180 714 / 0.0 chromatin protein family (.1.2.3) Potri.018G086100 [exp] 486 / 2e-168 AT1G77180 749 / 0.0 chromatin protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02731 [flax] [poplar] SKIP_SNW SKIP/SNW domain
Representative CDS sequence Show only first row Show all	>Lus10027157 pacid=23145396 polypeptide=Lus10027157 locus=Lus10027157.g ID=Lus10027157.BGIv1.0 annot-version=v1.0 ATGGCTGCGATGACTCCGTTGAAGGAGATACTACCTCCAGCCAAGTCAACAGTTTCGACCTACTATGACCACTCCAACGATCCTTGGTTCAAGCAGAGGT TCAGCGCAGTCGAGGTCGAGAGCTCCTCAGCGGCCGTGAAAGCCAAAGTTGTGCCTCCTTACTTGAAGCGTGAAGGTTTTGTTCCGAGGAGGGTCGATGA TTTCGGAGATGGCGGTGCTTTCCCGGAGATCCACATCGCTCAGTATCCTCTTGACATGGGGAGAAAAAACTCCGCCAAACCAGGATCGAAGATTCTTCCC GTCACTGTAGATGCTCATGGAGATGTCGCCTATGATGCGATTGTGAGACAGAACGAGAACTCGAAGAAGATTGTGTATTCTCAGCTTAAGGATATTGTCC CCAAGGTTCTGAAGAACGAGGAGCAAGTTGATGATGCCGACAAGGATGATGAGTTGATGATAAAGGAGCAGACAAGGATGGAAACGCAAGCTGCGATTGA GAAGCGTGTCAATGTGGGACTGAGTGCAGCGCAGCCGAAGAACGTTCCTAAACATTCTTCGGAGTCGCAGTACATCAAGTACAAGCCGTCGCAGCAATCT GCAGCGTTCAATTCCGGGGCGAAGGAGAGGGTTATTCGGATGGTGGAGATGCCTGTCGATCCTCTTGAGCCACCAAAGTTCAAGCACAAGAGGGTTCCTA GAGCTTCCGGATCTCCACCGGTTCCAGTAATGCATTCCCCTCCTAGACCAGTGACTGTGAAAGATCAGCAGGATTGGAAAATCCCGCCGTGTATTTCAAA CTGGAAGAATCCGAAAGGTTACACAATTCCACTCGATAAGCGTCTTGCAGCTGATGGAAGAGGGTTGCAGGATGTTCAGATCAACGATAATTTCGCCAAG CTCTCTGAATCGCTTTATGTAGCGGAGCAGAAGGCCAGAGAAGCTGTTGCTATGAGGTCTAAAGTTCAGAAGGAGATGATGATGAAGGAGAAAGAGAGGA AAGAACAGGAGTTGCGGGCTTTAGCTCAGAAGGCTCGAGCTGAAAGAACCGGCACTGCCGCTCTATCTTCTACTGCGATGTCTCGATGCCAATGGATGAC ATGGACACTCGAGGAGATTACGATACAGTACGAGATAGGCAGAAGGAATCTCTTCCTCCTCCTCCTCCTCCTAAAGAATCTAGGGAGGAGAGGGAAGATC GAATCAAAAGAGAGAAGATTCGTGAGGAAAGGAGGAGAGAGAGGGAGAGAGAGAGGAGGTTGGAGGCGAAGGATGCTGCAATGGGGAAGAAGAGCAAGAT AA
AA sequence Show only first row Show all	>Lus10027157 pacid=23145396 polypeptide=Lus10027157 locus=Lus10027157.g ID=Lus10027157.BGIv1.0 annot-version=v1.0 MAAMTPLKEILPPAKSTVSTYYDHSNDPWFKQRFSAVEVESSSAAVKAKVVPPYLKREGFVPRRVDDFGDGGAFPEIHIAQYPLDMGRKNSAKPGSKILP VTVDAHGDVAYDAIVRQNENSKKIVYSQLKDIVPKVLKNEEQVDDADKDDELMIKEQTRMETQAAIEKRVNVGLSAAQPKNVPKHSSESQYIKYKPSQQS AAFNSGAKERVIRMVEMPVDPLEPPKFKHKRVPRASGSPPVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAK LSESLYVAEQKAREAVAMRSKVQKEMMMKEKERKEQELRALAQKARAERTGTAALSSTAMSRCQWMTWTLEEITIQYEIGRRNLFLLLLLLKNLGRRGKI ESKERRFVRKGGERGRERGGWRRRMLQWGRRAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027157 [exp]	0	1
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10001145 [exp]	4.9	0.8097
AT3G13290		VCR	varicose-related (.1)		Lus10039116 [exp]	5.7	0.8404
AT5G53480			ARM repeat superfamily protein...		Lus10008863 [exp]	12.8	0.8160
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10032234 [exp]	13.8	0.7229
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10011325 [exp]	18.0	0.7192
AT3G57890			Tubulin binding cofactor C dom...		Lus10021031 [exp]	19.4	0.7975
AT5G53480			ARM repeat superfamily protein...		Lus10008864 [exp]	21.2	0.7985
AT2G01270		ATQSOX2	quiescin-sulfhydryl oxidase 2 ...		Lus10035269 [exp]	24.1	0.7942
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10005233 [exp]	25.3	0.7669
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	30.9	0.7807

Compare expression of checked genes

Lus10027157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.