Plant FIBer expression Database

Lus10027158 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G77180 193 / 5e-59 SKIP chromatin protein family (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039685
[exp]
250 / 9e-81 AT1G77180 826 / 0.0 chromatin protein family (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G086100
[exp]
206 / 4e-64 AT1G77180 749 / 0.0 chromatin protein family (.1.2.3)
Potri.006G163700
[exp]
205 / 2e-63 AT1G77180 714 / 0.0 chromatin protein family (.1.2.3)
PFAM info
Representative CDS sequence
>Lus10027158 pacid=23145367 polypeptide=Lus10027158 locus=Lus10027158.g ID=Lus10027158.BGIv1.0 annot-version=v1.0
ATGGCTTCTGCAGGGGCTGCAAAAGGAGGGGAGGTTATGTATGATCAGAGGCTGTTTAATCAAGAGAAAGGGATGGATTCTGGCTTTCAGACTGATGATC
AGTACAATGTGTATGATAAGGGTTTGTTTACAGCTCAGCCGACTCTTTCGACTCTGTACAGGCCGAAGAAGGATGCTGATTCTGAGATGTACGGAGGTGC
TGATGAGCAGATGGATAAGATTATGAATACAGACCGGTTCAAACCGGATAAGGCCTTCACCGGTACGGCGGAGAGGGGTGGCGTTCAGAGAGACGGACCG
GTTGAGTTTGAGAAGGAAGCTGAGGAGGCTGATCCGTTTGGTCTTGATCAGTTCTTGACTGAAGTGAAGAAGGGGAAGAAGGCTGATAGGGGTGGTGGTG
GGACGATGAGGGCTAGTGGCGGTGGTTCTTCGAACCGAGATGATTATGGTGGTGGCTCTGGGAGGAGTCGCATCGGATTCGAGAGGGGCCATTAA
AA sequence
>Lus10027158 pacid=23145367 polypeptide=Lus10027158 locus=Lus10027158.g ID=Lus10027158.BGIv1.0 annot-version=v1.0
MASAGAAKGGEVMYDQRLFNQEKGMDSGFQTDDQYNVYDKGLFTAQPTLSTLYRPKKDADSEMYGGADEQMDKIMNTDRFKPDKAFTGTAERGGVQRDGP
VEFEKEAEEADPFGLDQFLTEVKKGKKADRGGGGTMRASGGGSSNRDDYGGGSGRSRIGFERGH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G77180 SKIP chromatin protein family (.1.2... Lus10027158
[exp]
0 1
AT5G13430 Ubiquinol-cytochrome C reducta... Lus10012580
[exp]
2.6 0.8747
AT5G42190 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubi... Lus10005610
[exp]
3.2 0.9146
AT1G33520 MOS2 modifier of snc1, 2, D111/G-pa... Lus10004607
[exp]
4.5 0.8932
AT2G37550 ASP1, AGD7 yeast pde1 suppressor 1, ARF-G... Lus10023766
[exp]
4.9 0.8756
AT5G42190 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubi... Lus10017282
[exp]
5.1 0.9094
AT4G27000 ATRBP45C RNA-binding (RRM/RBD/RNP motif... Lus10043106
[exp]
5.5 0.8695
AT5G53800 unknown protein Lus10003591
[exp]
7.5 0.8947
AT3G02790 C2H2ZnF zinc finger (C2H2 type) family... Lus10036432
[exp]
8.1 0.8951
AT1G78310 VQ motif-containing protein (.... Lus10036479
[exp]
8.9 0.8489
AT5G42190 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubi... Lus10017281
[exp]
9.2 0.8482

Lus10027158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.