Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31480 1375 / 0 Coatomer, beta subunit (.1.2) AT4G31490 1368 / 0 Coatomer, beta subunit (.1) AT4G23460 67 / 4e-11 Adaptin family protein (.1) AT4G11380 63 / 7e-10 Adaptin family protein (.1.2) AT1G31730 60 / 8e-09 Adaptin family protein (.1) AT1G60070 48 / 3e-05 Adaptor protein complex AP-1, gamma subunit (.1.2) AT5G11490 44 / 0.0004 adaptin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039684 [exp] 1625 / 0 AT4G31480 1670 / 0.0 Coatomer, beta subunit (.1.2) Lus10031570 [exp] 1526 / 0 AT4G31480 1659 / 0.0 Coatomer, beta subunit (.1.2) Lus10015105 [exp] 1521 / 0 AT4G31480 1650 / 0.0 Coatomer, beta subunit (.1.2) Lus10028775 [exp] 76 / 9e-14 AT4G23460 1556 / 0.0 Adaptin family protein (.1) Lus10017508 [exp] 69 / 1e-11 AT4G23460 1565 / 0.0 Adaptin family protein (.1) Lus10024654 [exp] 69 / 2e-11 AT4G23460 1560 / 0.0 Adaptin family protein (.1) Lus10032286 [exp] 69 / 2e-11 AT4G23460 1567 / 0.0 Adaptin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G007400 [exp] 1447 / 0 AT4G31480 1672 / 0.0 Coatomer, beta subunit (.1.2) Potri.006G273300 [exp] 1444 / 0 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2) Potri.001G101400 [exp] 77 / 3e-14 AT4G23460 1486 / 0.0 Adaptin family protein (.1) Potri.003G130400 [exp] 71 / 2e-12 AT4G23460 1471 / 0.0 Adaptin family protein (.1) Potri.004G235200 [exp] 60 / 7e-09 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.006G092800 [exp] 49 / 1e-05 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.016G104700 [exp] 48 / 3e-05 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.012G055000 [exp] 47 / 4e-05 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.015G045600 [exp] 46 / 0.0001 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region CL0159 [flax] [poplar] E-set PF07718 [flax] [poplar] Coatamer_beta_C Coatomer beta C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10027159 pacid=23145413 polypeptide=Lus10027159 locus=Lus10027159.g ID=Lus10027159.BGIv1.0 annot-version=v1.0 ATGGAGAAATCGTGTTCTCTGCTGGTTCACTTTGACAAGGGGTCGCCAGCGGTTGCGAATGAGATTAAGGAAGCTCTAGAAGGGAATGACGTTTCGGCCA AGATTGATGGCATGAAGAAGGCAATTAGCCTTTTGTTGAATGGTGAAAACTTGCCTCAGCTTTTCATTACTATTCTTAGATATGTCCTGCCTTCTGAGGA TCACACCATACAGAAGCTGTTGCTTTTCTACTTGGAGATCATTGATAAGAAAGATGCTTCGGGGAAGCTTCTTCCGGAGATGATATTGATATGCCAGAAT CTGATGAACAATCTTCAACATCCAAATGAGTACATCCGTGGGGTGACTTTGAGGTTTCTTTGCCGGATTCATGAGACGGAGATTATAGAGCCATTGATCC CTTCGGTGCTGCAGAATTTGGAGCATCGCCACCCTTTTATTAGGAGGAATGCTATCTTTGCAGTGATGTCCATATATAAGCTTCCTCAGGGCGACCAGCT TCTCATTGATGCTCCGGAAATGATAGAGAAGGCTCTTTCCTCAGAGCACGATCCTTCAGCCAAGCGCAATGCGTTCCTGATGCTTTTCACTTGTGCACAA GATCGAGCTATTAATTATCTCTTCAGCCACGTTGATAAGATCCCTGAATGGGATGAGAAGCTTCAGATGGTTGTTCTGGAGTTGATTCGTAAAGTTTGTA AAACAAGTAGGGGAGAGAAGGGAAGATACATCAAAATCATCATATCATTGTTGACTGCGCCTTCGAGTGCTGTGGTTTACGAGTGTGCTGGAACTCTTGT TTCTCTTTCATCTGCTCCCACTGCTATTAAAGCTGCTGCTAACACATACGGGCAACTCCTTTTGTCTCAGAGTGATAACAATGTCAAGCTTATTGTGCTT GATCGCTTGCAAGAGCTGAAGTCTTCTCACAGGGAAATCATGGTCGAGATGGCTATGGACGTGCTTAGGGCACTCTCCAGCCCTAATCTTGATATACGCC GAAAGACTCTTGATATTGTTCTTGACTTAATCACTGCTAGGAATGTGAATGAAATTGTTCAGATGCTGAAGAAGGAAGTTGTTAAGACCCAGAGTGGAGA GCTTGAAAAGAATGGCGAGTACAGGCAGATGCTTATTCAAGCTATCCATTCTTGTGCTATTAAGTTCCCAGAGGTGGCAAGCATAGTTGTTCACTTGTTG ATGGATTTCCTTGGGGATAGCAACATTGCTTCAGCTATCGATGTGGTTGTTTTTGTCCGGGAAATAATTGAAACCAATCCTAAACTCAGAGTTTCGATAG TAACAAGGCTGTTGGATACTTTCTATCAGATCCGAGCAGCCAGGGTATGCTCCGGTGCCCTTTGGATCATTGGGGAGTACTGCCTTTCCCTTTCTGAAGT AGAGAGTGGCATAGCAACAATCAAGCAGTGTCTTGGAGAATTGCCGTTTTTCTCAATTTCAGAAGAAGGTGAAGTTACTGATTCCTCCAAAAAGCCACCA CAGCCGAGTTCCATCACTGTCTCTTCAAGAAAACCCGCTATCCTTTCTGATGGGACATATGCAACACAAAACGCTGCCTCTGAAACAGCCTTTTCTCCGC CTACTGTAGTTCAAGGATCACTGTCCACTGGAAATTTGAGATCCCTTCTTCTCACTGGGGATTTTTTCCTTGGAGCAGTTGTTGCATGCACTCTAACAAA ACTGGTTCTGAGACTCGAAGAGGTGCAATCTTCTAAACTGGAGGTCAACAAAGCAGCCACACAGACTTTGTTGATAATGGTCTCCATGCTTCAATTGGGA CAGTCTTCTGTCCTGCCTCATCCAATTGACAGCGATTCATATGATAGGATCCTTCTGTGCATTAGGTTGCTATGTAATACTGGTGATGACATCCGGAAGA TATGGTTGCAATCATGCCGTCAAAGCTTTGTGAAAATGCTCTCAGAAAAGCAATTGAGGGAAACTGAGGAATTGAAGGCAAAGGCTCAGGTTTCTCATGC ACAACCAGATGATCTTGTCGACTTCTATCATTTAAAGAGCAGGAAGGGTATGAGTCAGCTGGAGTTGGAAGACGAAGTACAAGATGATTTGAAGCGTGCA ACGGGAGAGTTCATCAACGATGGCAATGACGCAAATAAGCTCAACCGAATCCTTCAGCTCACTGGTTTTAGTGACCCTGTGTATGCCGAAGCACATGTCA AGGTCAACCACTACGACATCGTACTTGATGTCACTGTCATCAACCGGACAAAGGAAACTCTCCAAAACTTGTGCCTGGAGTTGGCTACAATGGGCGATCT CAAGCTAGTTGAGCGTCCTCAGAATTATGCTTTGGCACCAAAATCAAGCAAACAGATAAAGCCCAACATAAGGGTCTCCACAACTGAAACCGGCGTTATT TGA
AA sequence Show only first row Show all	>Lus10027159 pacid=23145413 polypeptide=Lus10027159 locus=Lus10027159.g ID=Lus10027159.BGIv1.0 annot-version=v1.0 MEKSCSLLVHFDKGSPAVANEIKEALEGNDVSAKIDGMKKAISLLLNGENLPQLFITILRYVLPSEDHTIQKLLLFYLEIIDKKDASGKLLPEMILICQN LMNNLQHPNEYIRGVTLRFLCRIHETEIIEPLIPSVLQNLEHRHPFIRRNAIFAVMSIYKLPQGDQLLIDAPEMIEKALSSEHDPSAKRNAFLMLFTCAQ DRAINYLFSHVDKIPEWDEKLQMVVLELIRKVCKTSRGEKGRYIKIIISLLTAPSSAVVYECAGTLVSLSSAPTAIKAAANTYGQLLLSQSDNNVKLIVL DRLQELKSSHREIMVEMAMDVLRALSSPNLDIRRKTLDIVLDLITARNVNEIVQMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASIVVHLL MDFLGDSNIASAIDVVVFVREIIETNPKLRVSIVTRLLDTFYQIRAARVCSGALWIIGEYCLSLSEVESGIATIKQCLGELPFFSISEEGEVTDSSKKPP QPSSITVSSRKPAILSDGTYATQNAASETAFSPPTVVQGSLSTGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQSSKLEVNKAATQTLLIMVSMLQLG QSSVLPHPIDSDSYDRILLCIRLLCNTGDDIRKIWLQSCRQSFVKMLSEKQLRETEELKAKAQVSHAQPDDLVDFYHLKSRKGMSQLELEDEVQDDLKRA TGEFINDGNDANKLNRILQLTGFSDPVYAEAHVKVNHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYALAPKSSKQIKPNIRVSTTETGVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10027159 [exp]	0	1
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009300 [exp]	1.4	0.9679
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	2.4	0.9585
AT3G08530			Clathrin, heavy chain (.1)		Lus10028976 [exp]	2.8	0.9603
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10031570 [exp]	4.0	0.9530
AT5G16300			Vps51/Vps67 family (components...		Lus10041337 [exp]	4.0	0.9376
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038111 [exp]	4.7	0.9317
AT1G31730			Adaptin family protein (.1)		Lus10037272 [exp]	5.3	0.9393
AT1G31730			Adaptin family protein (.1)		Lus10035684 [exp]	6.3	0.9469
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021680 [exp]	8.1	0.9449
AT3G03305			Calcineurin-like metallo-phosp...		Lus10026788 [exp]	9.3	0.8488

Compare expression of checked genes

Lus10027159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.