Plant FIBer expression Database

Lus10027160 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31490 235 / 1e-73 Coatomer, beta subunit (.1)
AT4G31480 234 / 2e-73 Coatomer, beta subunit (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039684
[exp]
255 / 8e-81 AT4G31480 1670 / 0.0 Coatomer, beta subunit (.1.2)
Lus10031570
[exp]
249 / 1e-78 AT4G31480 1659 / 0.0 Coatomer, beta subunit (.1.2)
Lus10015105
[exp]
248 / 3e-78 AT4G31480 1650 / 0.0 Coatomer, beta subunit (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G273300
[exp]
237 / 2e-74 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2)
Potri.018G007400
[exp]
234 / 4e-73 AT4G31480 1672 / 0.0 Coatomer, beta subunit (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0159 E-set PF07718 Coatamer_beta_C Coatomer beta C-terminal region
Representative CDS sequence
>Lus10027160 pacid=23145454 polypeptide=Lus10027160 locus=Lus10027160.g ID=Lus10027160.BGIv1.0 annot-version=v1.0
ATGGATTACATCTCTCCTGCTTCTTGCTCGGATGCTGCGTTCCGGACTATGTGGGCAGAATTTGAATGGGAAAATAAGGTTGCTGTTAACACAACAATTC
AGAACGAGAAGGAATTCCTGGACCATATCATCAAGTCCACAAATATGAAGTGTCTGACTGCACCGTCTGCACTTGATGGAGAGTGTGGATTCCTGGCTGC
AAACTTGTACGCCAAGAGTGTGTTCGGTGAGGATGCGTTGGTGAACATTAGCCTGGAGAAGGAAGGAGATGAAAAGCTCAGTGGATACATCAGGATTCGG
AGCAAGACGCAAGGAATCGCACTCAGCCTGGGTGATAAAATCACCTTGAAACAGAAAGGTGGCAGTAGTTGA
AA sequence
>Lus10027160 pacid=23145454 polypeptide=Lus10027160 locus=Lus10027160.g ID=Lus10027160.BGIv1.0 annot-version=v1.0
MDYISPASCSDAAFRTMWAEFEWENKVAVNTTIQNEKEFLDHIIKSTNMKCLTAPSALDGECGFLAANLYAKSVFGEDALVNISLEKEGDEKLSGYIRIR
SKTQGIALSLGDKITLKQKGGSS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G31490 Coatomer, beta subunit (.1) Lus10027160
[exp]
0 1
AT5G42360 Galactose oxidase/kelch repeat... Lus10030733
[exp]
5.8 0.8355
AT1G51540 Galactose oxidase/kelch repeat... Lus10034826
[exp]
6.2 0.8524
AT3G27240 Cytochrome C1 family (.1) Lus10041579
[exp]
12.2 0.7463
AT5G07720 Galactosyl transferase GMA12/M... Lus10000563
[exp]
12.3 0.8127
AT1G05850 CTL1, HOT2, ERH... POM-POM1, SENSITIVE TO HOT TEM... Lus10041278
[exp]
13.3 0.8044
AT3G13410 unknown protein Lus10009853
[exp]
16.6 0.7551
AT3G46520 ACT12 actin-12 (.1) Lus10016259
[exp]
17.5 0.8116
AT1G80510 Transmembrane amino acid trans... Lus10034093
[exp]
18.5 0.8138
AT3G02350 GAUT9 galacturonosyltransferase 9 (.... Lus10003045
[exp]
22.4 0.8033
AT1G13560 AAPT1, ATAAPT1 aminoalcoholphosphotransferase... Lus10019149
[exp]
22.7 0.7187

Lus10027160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.