Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25140 140 / 9e-43 OLE1, OLEO1 oleosin 1 (.1) AT2G25890 114 / 6e-33 Oleosin family protein (.1) AT5G51210 108 / 7e-31 OLEO3 oleosin3 (.1) AT3G01570 78 / 2e-18 Oleosin family protein (.1) AT5G40420 78 / 2e-18 OLE2, PA23, OLEO2 oleosin 2 (.1) AT3G27660 72 / 5e-16 OLE3, OLEO4 OLEOSIN 3, oleosin 4 (.1) AT5G07550 66 / 8e-15 ATGRP19, GRP19 glycine-rich protein 19 (.1.2.3) AT3G18570 67 / 2e-14 Oleosin family protein (.1) AT5G61610 66 / 3e-13 Oleosin family protein (.1) AT1G48990 57 / 9e-11 Oleosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039683 [exp] 221 / 3e-75 AT4G25140 159 / 2e-50 oleosin 1 (.1) Lus10031387 [exp] 192 / 6e-64 AT4G25140 164 / 1e-52 oleosin 1 (.1) Lus10010943 [exp] 186 / 3e-56 AT1G22400 535 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10017460 [exp] 160 / 4e-51 AT4G25140 136 / 9e-42 oleosin 1 (.1) Lus10028822 [exp] 153 / 1e-48 AT4G25140 146 / 3e-46 oleosin 1 (.1) Lus10022141 [exp] 93 / 4e-23 AT4G25140 106 / 3e-28 oleosin 1 (.1) Lus10017992 [exp] 82 / 4e-20 AT3G18570 136 / 4e-41 Oleosin family protein (.1) Lus10041987 [exp] 77 / 5e-18 AT3G18570 129 / 2e-38 Oleosin family protein (.1) Lus10032461 [exp] 74 / 4e-17 AT3G18570 142 / 1e-43 Oleosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G080000 [exp] 137 / 4e-42 AT4G25140 108 / 1e-30 oleosin 1 (.1) Potri.003G150600 [exp] 135 / 1e-41 AT4G25140 124 / 3e-37 oleosin 1 (.1) Potri.006G234900 [exp] 105 / 2e-29 AT2G25890 113 / 1e-32 Oleosin family protein (.1) Potri.018G057800 [exp] 93 / 1e-24 AT2G25890 91 / 5e-24 Oleosin family protein (.1) Potri.001G345800 [exp] 80 / 1e-19 AT3G01570 140 / 6e-43 Oleosin family protein (.1) Potri.T125308 [exp] 73 / 1e-16 AT5G40420 108 / 5e-30 oleosin 2 (.1) Potri.015G081901 [exp] 73 / 1e-16 AT5G40420 108 / 5e-30 oleosin 2 (.1) Potri.017G071800 [exp] 72 / 2e-16 AT3G01570 130 / 4e-39 Oleosin family protein (.1) Potri.012G059400 [exp] 68 / 1e-14 AT3G18570 113 / 4e-32 Oleosin family protein (.1) Potri.012G083400 [exp] 66 / 3e-14 AT5G40420 97 / 2e-25 oleosin 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01277 [flax] [poplar] Oleosin Oleosin
Representative CDS sequence Show only first row Show all	>Lus10027161 pacid=23145537 polypeptide=Lus10027161 locus=Lus10027161.g ID=Lus10027161.BGIv1.0 annot-version=v1.0 ATGGATCAGTCGCACCAGACATACGCCGGAACCATGCAGAACCCGAGCTATGGCGGCGGAGGCACCATGCACCACCAGCAGCAGCAGCCGAGGTCTTACC AGGCGGTGAAGGCGGCCACCGCAGCCACCGCGGGTGGATCCCTCATCGTTCTCTCCGGTCTCATCCTTACGGCCACCGTCATTTCACTCATCCTAGCCAC CCCTCTCCTTGTCATCTTCAGCCCTGTTCTTGTCCCGGCTCTCATCACCGTCGGGCTCTTGATCACCGGGTTTCTGGCCTCCGGTGGGTTTGGTGTCGCC GCCGTCACCGTCTTATCCTGGATCTATAGGTATGTGACCGGTGGGCACCCGGTGGGAGCGGATTCATTGGAGCAGGCGAGGTCGAGGCTGGCCGGGAAGG CGAGGGAGGTGAAGGACAGGGCGTCGGAGTTTGGACAGCAGCACGTCACAGGTGGTCAACAGACCTCTTAA
AA sequence Show only first row Show all	>Lus10027161 pacid=23145537 polypeptide=Lus10027161 locus=Lus10027161.g ID=Lus10027161.BGIv1.0 annot-version=v1.0 MDQSHQTYAGTMQNPSYGGGGTMHHQQQQPRSYQAVKAATAATAGGSLIVLSGLILTATVISLILATPLLVIFSPVLVPALITVGLLITGFLASGGFGVA AVTVLSWIYRYVTGGHPVGADSLEQARSRLAGKAREVKDRASEFGQQHVTGGQQTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10027161 [exp]	0	1
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10026898 [exp]	6.1	0.6090
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10025597 [exp]	6.2	0.7754
AT4G27570			UDP-Glycosyltransferase superf...		Lus10013367 [exp]	11.2	0.7579
AT5G59190			subtilase family protein (.1)		Lus10040747 [exp]	15.2	0.7138
AT5G65530			Protein kinase superfamily pro...		Lus10012727 [exp]	17.9	0.7111
AT3G13690			Protein kinase protein with ad...		Lus10009559 [exp]	19.9	0.7100
					Lus10003825 [exp]	21.9	0.7059
					Lus10029261 [exp]	23.7	0.7059
AT5G56990			unknown protein		Lus10029528 [exp]	25.3	0.7059
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	26.8	0.7059

Compare expression of checked genes

Lus10027161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.