Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30700 64 / 2e-12 FAD-binding Berberine family protein (.1) AT4G20840 61 / 3e-11 FAD-binding Berberine family protein (.1) AT1G30740 61 / 4e-11 FAD-binding Berberine family protein (.1) AT1G26400 59 / 9e-11 FAD-binding Berberine family protein (.1) AT4G20830 59 / 1e-10 FAD-binding Berberine family protein (.1.2) AT1G26420 59 / 1e-10 FAD-binding Berberine family protein (.1) AT4G20820 59 / 2e-10 FAD-binding Berberine family protein (.1) AT1G26380 58 / 2e-10 FAD-binding Berberine family protein (.1) AT1G26410 58 / 3e-10 FAD-binding Berberine family protein (.1) AT1G11770 58 / 4e-10 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039682 [exp] 124 / 1e-33 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 68 / 1e-13 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 66 / 5e-13 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10038446 [exp] 65 / 1e-12 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 64 / 3e-12 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 63 / 7e-12 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10008410 [exp] 62 / 1e-11 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 62 / 2e-11 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10041290 [exp] 61 / 5e-11 AT2G34790 375 / 8e-126 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G162900 [exp] 72 / 3e-15 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162968 [exp] 71 / 1e-14 AT4G20820 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 71 / 1e-14 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162828 [exp] 71 / 1e-14 AT5G44440 521 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461500 [exp] 69 / 4e-14 AT4G20820 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162940 [exp] 69 / 4e-14 AT5G44440 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G163232 [exp] 69 / 4e-14 AT5G44440 536 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462000 [exp] 68 / 7e-14 AT5G44440 520 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461800 [exp] 68 / 8e-14 AT5G44440 516 / 1e-179 FAD-binding Berberine family protein (.1) Potri.001G462100 [exp] 68 / 9e-14 AT4G20820 521 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10027162 pacid=23145414 polypeptide=Lus10027162 locus=Lus10027162.g ID=Lus10027162.BGIv1.0 annot-version=v1.0 ATGGCATGGGTTGACTCCGGCACGATTCCAGGCGAGTTATACTACCTGATCGCGGAGAAGAGTCCGAATCTCGCATTTCCGGCGGGCGTCTGCCACACCG TCGGTGTCGGTGGGCATTTCAGCGGAGGCGGGTTCGGGCTTCTGGTGAGGAAATTCGGCCTAGCGGCGGATAACGTGGTGGACGCGGTTTTGGTCAACGC CGACGGTGAAATTCTCGACCGGAAGTCAATGGGGGAAGATAGATTGGAAAGCGGCAAGGAGATGAGCTGGTTGGAGGCCATCGTGTTCCACGGTGGATTC CCGAGCAATACTCCTGTGGAAGTACTGCTCAACAGGTCAATTAGTCCGCCTGTGATCGGTTCGTTCAAGTACAAAGGAAAATCCAATTACGTTCAAGACC CGATTTCCGAAGTAGCCCTATTGAAGATACGAGGGAAGTTTGATGAGATCGATGTCGGGTCAGAGTGCTATGGTGATGGTGTCATTTGGAGTCAAGACTA G
AA sequence Show only first row Show all	>Lus10027162 pacid=23145414 polypeptide=Lus10027162 locus=Lus10027162.g ID=Lus10027162.BGIv1.0 annot-version=v1.0 MAWVDSGTIPGELYYLIAEKSPNLAFPAGVCHTVGVGGHFSGGGFGLLVRKFGLAADNVVDAVLVNADGEILDRKSMGEDRLESGKEMSWLEAIVFHGGF PSNTPVEVLLNRSISPPVIGSFKYKGKSNYVQDPISEVALLKIRGKFDEIDVGSECYGDGVIWSQD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44400			FAD-binding Berberine family p...		Lus10027162 [exp]	0	1
					Lus10000984 [exp]	2.6	1.0000
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	3.7	1.0000
					Lus10018912 [exp]	3.9	1.0000
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	4.6	1.0000
					Lus10017835 [exp]	5.3	1.0000
					Lus10040014 [exp]	6.5	1.0000
AT3G23350			ENTH/VHS family protein (.1)		Lus10021173 [exp]	7.0	1.0000
AT1G06770		DRIP1	DREB2A-interacting protein 1 (...		Lus10042532 [exp]	7.5	1.0000
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10042336 [exp]	7.7	0.9786
					Lus10032805 [exp]	8.5	1.0000

Compare expression of checked genes

Lus10027162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.