Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11290 484 / 2e-173 Peroxidase superfamily protein (.1) AT1G05260 450 / 3e-160 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT3G21770 421 / 1e-148 Peroxidase superfamily protein (.1) AT5G15180 343 / 6e-118 Peroxidase superfamily protein (.1) AT3G01190 333 / 2e-114 Peroxidase superfamily protein (.1) AT1G05240 305 / 8e-103 Peroxidase superfamily protein (.1) AT1G05250 305 / 8e-103 Peroxidase superfamily protein (.1) AT2G18150 283 / 2e-94 Peroxidase superfamily protein (.1) AT4G36430 276 / 2e-91 Peroxidase superfamily protein (.1) AT2G39040 276 / 2e-91 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039681 [exp] 620 / 0 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10027164 [exp] 435 / 3e-154 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10031548 [exp] 432 / 8e-153 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039680 [exp] 429 / 8e-152 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 429 / 1e-151 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10018374 [exp] 349 / 2e-120 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10007638 [exp] 342 / 1e-117 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10006756 [exp] 329 / 3e-112 AT3G01190 379 / 3e-132 Peroxidase superfamily protein (.1) Lus10041784 [exp] 276 / 2e-91 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G038100 [exp] 508 / 0 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 483 / 3e-173 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 472 / 7e-169 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 363 / 1e-125 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 359 / 3e-124 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 354 / 3e-122 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.004G023100 [exp] 349 / 2e-120 AT3G01190 403 / 1e-141 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 348 / 4e-120 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 348 / 5e-120 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 345 / 1e-118 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10027163 pacid=23145585 polypeptide=Lus10027163 locus=Lus10027163.g ID=Lus10027163.BGIv1.0 annot-version=v1.0 ATGGCAAGGCTGAGATTTTCTTCTATTGCATTACTTGTAATGGTGGTAGCTCTTGTTTCGGTCGGATCGGCAAATGCTCAGTTGAAGATGGGCTTCTACT CCAAGAGCTGTCCCAAAGCGGAGAATATCATACAAGACTTCATCCACCAGCACATCACCAGTGTGCCTTCTCTTGCCGCCACATTCATCAGGATGCATTT CCACGATTGCTTCGTCAGGGGATGTGATGCATCGGTGCTCCTGAACACAACCTCAGGGGAGCAACTCGAGAAGCAGGCGCCTCCTAACCTGACACTCAGA GGGTTCGACTTCATTGACAGGGTGAAGAGCCTCGTTGAAGCTGAATGCCCTGGAGTTGTTTCCTGTGCTGATGTCCTGACTCTGGTCACTAGGGACTCAA TCGTTGCAGTTGGCGGTCCATCTTGGAGAGTTCCCACGGGGCGAAGAGACGGTGTGATCTCTCGATTTTCGGAGTCTCTGAACAACATTCCTCCTCCATT TGCCAACTTCACCACTCTCCAGACAATGTTTGCCAACCAAGGGCTTGATGTGAAAGACCTTGTGTTGCTTTCAGGGGCACATACAATTGGCATTTCACAT TGCTCTTCATTCTCCAACCGGCTCTACAACTTCACCGGCAGGGGAGACGCCGACCCGGCTCTCGACACCAGCTACGCCTCGAATCTACGATCGAGAAAGT GTCGAAGCATTAGTGACAGCACAACGAAGGTCGAGATGGATCCCGGTAGCAGGAACACCTTTGACCTGAGCTACTACTCATTGCTCCTGAAGAGGAGAGG ACTGTTCGAGTCGGATGCTGCCCTGATAACCAACTCTGCCTCGTTGCAACTCGTCGAGAAGATCGCAAAAGGCTCCGTGAAGGATTTCTTCGACGAGTTC GCCCTAGCCATGGAGAAGCTGGGTCGGGTCAATGTGAAAACCGGGTCCAACGGTGAGATCAGGAAGCAATGTGCTTTGGTTAATTAG
AA sequence Show only first row Show all	>Lus10027163 pacid=23145585 polypeptide=Lus10027163 locus=Lus10027163.g ID=Lus10027163.BGIv1.0 annot-version=v1.0 MARLRFSSIALLVMVVALVSVGSANAQLKMGFYSKSCPKAENIIQDFIHQHITSVPSLAATFIRMHFHDCFVRGCDASVLLNTTSGEQLEKQAPPNLTLR GFDFIDRVKSLVEAECPGVVSCADVLTLVTRDSIVAVGGPSWRVPTGRRDGVISRFSESLNNIPPPFANFTTLQTMFANQGLDVKDLVLLSGAHTIGISH CSSFSNRLYNFTGRGDADPALDTSYASNLRSRKCRSISDSTTKVEMDPGSRNTFDLSYYSLLLKRRGLFESDAALITNSASLQLVEKIAKGSVKDFFDEF ALAMEKLGRVNVKTGSNGEIRKQCALVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11290			Peroxidase superfamily protein...		Lus10027163 [exp]	0	1
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	1.4	0.9562
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10023211 [exp]	2.0	0.9415
AT3G45070			P-loop containing nucleoside t...		Lus10031624 [exp]	2.2	0.9229
AT5G05340			Peroxidase superfamily protein...		Lus10008581 [exp]	4.9	0.9140
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	10.2	0.9388
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10027427 [exp]	12.6	0.9059
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10022443 [exp]	14.4	0.9091
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10038920 [exp]	15.1	0.9328
					Lus10014263 [exp]	16.1	0.8867
AT5G54370			Late embryogenesis abundant (L...		Lus10037886 [exp]	22.0	0.9161

Compare expression of checked genes

Lus10027163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.