Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05260 455 / 4e-162 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G11290 429 / 9e-152 Peroxidase superfamily protein (.1) AT3G21770 426 / 1e-150 Peroxidase superfamily protein (.1) AT3G01190 337 / 1e-115 Peroxidase superfamily protein (.1) AT5G15180 335 / 6e-115 Peroxidase superfamily protein (.1) AT1G05240 296 / 1e-99 Peroxidase superfamily protein (.1) AT1G05250 296 / 1e-99 Peroxidase superfamily protein (.1) AT2G39040 272 / 1e-89 Peroxidase superfamily protein (.1) AT2G41480 260 / 4e-85 Peroxidase superfamily protein (.1) AT3G03670 259 / 4e-85 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039680 [exp] 628 / 0 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 549 / 0 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10031548 [exp] 543 / 0 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039681 [exp] 435 / 4e-154 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10027163 [exp] 433 / 2e-153 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10018374 [exp] 348 / 4e-120 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10007638 [exp] 333 / 3e-114 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10006756 [exp] 324 / 2e-110 AT3G01190 379 / 3e-132 Peroxidase superfamily protein (.1) Lus10041250 [exp] 278 / 5e-92 AT2G39040 310 / 3e-104 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G122100 [exp] 470 / 3e-168 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 458 / 2e-163 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 438 / 2e-155 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 357 / 2e-123 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 357 / 2e-123 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 357 / 2e-123 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 357 / 2e-123 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 355 / 6e-123 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 355 / 9e-123 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 346 / 3e-119 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10027164 pacid=23145459 polypeptide=Lus10027164 locus=Lus10027164.g ID=Lus10027164.BGIv1.0 annot-version=v1.0 ATGGAGAAATCGCATCTCTGTATCTTTACTCTTCTTTTGGCAATCTTCTTTGCAACAACTGAAGCTCAGCTTCAGATGAACTTCTACTCACAGAGTTGCC CCAAAGCAGAGCAGATCGTCCTCGATTATGTCAAGAAACACATCTCCAATGCTCCCACCCTCGCCTCCCCGATCCTCCGCATGCATTTCCACGACTGCTT CGTCAGGGGGTGTGATGCTTCTGTGATGATCAACTCGACTTCTAATAATACCGCGGAGAAAGCTGCGGCTCCGAATTTGACTCTAAGAGGGTTCAACTTC CTCGACGGTATCAAGAGCTTGCTCGAGAAAGAGTGCCCTGGCGTCGTCTCTTGTGCTGATATTCTCGCTCTTACGGCTAGAGACTCTGTTGCTTTTATTG GTGGACCCACTTGGAGAGTTCCGACGGGGAGAAGGGATGGGAGGATCTCGAACTCGTCGGAGGCGCTTAACGCGATCCCTCCTCCGACTAGCAACTTCAC CACTCTCCAGAGGTTGTTCGGGAATGTTGGTCTCGATTTGAAGGACTTGGTCCTCCTCTCCGCGGCCCACACAATCGGGATATCTCACTGCAACTCCTTC TCTGCTCGGCTCTACAACTTCACGGGCCGGGGCAACGGGCAGGACCCGGCCCTAGACAGTGAGTACGCGACCAAGTTGAAAATGAAGTGTCTAAACACGA CCGACAACGTGACCATTGTGGAGATGGACCCGGGGAGTTTCCGGACGTTCGACCTAAGCTACTTCCAGCTGGTCCAAAAGAGGAGAGGGTTGTTCCAATC CGACGCCGCATTGAGCACGAGTAGTACCACGATGTCGCTCATCAACCAGTTCGGTTCGGGTACCGTTCAGAACTTCTTCACCGAGTTTGCTCTGTCTATG GAGAAGATGGGCCGGATCAATGTGAAGACCGGGTCGGCTGGTGAGATCCGGAGGAATTGTGCCGTGGTTAATTAA
AA sequence Show only first row Show all	>Lus10027164 pacid=23145459 polypeptide=Lus10027164 locus=Lus10027164.g ID=Lus10027164.BGIv1.0 annot-version=v1.0 MEKSHLCIFTLLLAIFFATTEAQLQMNFYSQSCPKAEQIVLDYVKKHISNAPTLASPILRMHFHDCFVRGCDASVMINSTSNNTAEKAAAPNLTLRGFNF LDGIKSLLEKECPGVVSCADILALTARDSVAFIGGPTWRVPTGRRDGRISNSSEALNAIPPPTSNFTTLQRLFGNVGLDLKDLVLLSAAHTIGISHCNSF SARLYNFTGRGNGQDPALDSEYATKLKMKCLNTTDNVTIVEMDPGSFRTFDLSYFQLVQKRRGLFQSDAALSTSSTTMSLINQFGSGTVQNFFTEFALSM EKMGRINVKTGSAGEIRRNCAVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10027164 [exp]	0	1
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10001885 [exp]	1.7	0.8996
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10040342 [exp]	7.7	0.8902
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10022550 [exp]	7.7	0.8705
AT1G24130			Transducin/WD40 repeat-like su...		Lus10029206 [exp]	10.7	0.8868
AT2G37530			unknown protein		Lus10025320 [exp]	11.0	0.8683
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010874 [exp]	13.9	0.8619
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10006909 [exp]	16.2	0.8627
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10001972 [exp]	19.1	0.8791
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	19.8	0.8824
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10032246 [exp]	20.1	0.8570

Compare expression of checked genes

Lus10027164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.