Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05710 1672 / 0 ACO3 aconitase 3 (.1) AT4G26970 1574 / 0 ACO2 aconitase 2 (.1) AT4G35830 1567 / 0 ACO1 aconitase 1 (.1.2) AT5G54950 95 / 2e-23 Aconitase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039678 [exp] 1897 / 0 AT2G05710 1704 / 0.0 aconitase 3 (.1) Lus10015116 [exp] 1789 / 0 AT2G05710 1707 / 0.0 aconitase 3 (.1) Lus10031561 [exp] 1738 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Lus10028405 [exp] 1585 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10041858 [exp] 1583 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10040070 [exp] 1558 / 0 AT2G05710 1620 / 0.0 aconitase 3 (.1) Lus10021533 [exp] 1457 / 0 AT2G05710 1523 / 0.0 aconitase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153400 [exp] 1710 / 0 AT2G05710 1695 / 0.0 aconitase 3 (.1) Potri.002G229200 [exp] 1692 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Potri.005G108100 [exp] 1572 / 0 AT4G35830 1668 / 0.0 aconitase 1 (.1.2) Potri.007G060900 [exp] 1572 / 0 AT4G35830 1658 / 0.0 aconitase 1 (.1.2) Potri.015G130201 [exp] 122 / 3e-32 AT4G35830 145 / 2e-41 aconitase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF00694 [flax] [poplar] Aconitase_C Aconitase C-terminal domain CL0364 [flax] [poplar] PF00330 [flax] [poplar] Aconitase Aconitase family (aconitate hydratase)
Representative CDS sequence Show only first row Show all	>Lus10027165 pacid=23145551 polypeptide=Lus10027165 locus=Lus10027165.g ID=Lus10027165.BGIv1.0 annot-version=v1.0 ATGTATATAAACGGCTCTGCCTCGCTCATCCGGAGAGCGTCTTCCAAGGCTAGAAACGTCTCCTCGCTCTCTGCTTCTTCTGCTGCATCCGGTGGTGGTT CCTCGACGGCGGCGGCGGCAGCACCGAAATTGGCTCCGGGGAATGGACACCAGTTCCAGCAGCAGCGATCTCTGAGCTTCTTCTCCGCGGTTCGATCCCT GCCGCGGTGGAGCCACGGTGTTAACTGGCGGGCTCAGGGTGCTGGTGGCGTACGCGCGCACGGAAGAGCTGCTGGTATCCCCGTGATTGAGCAGTTCCAG AGGAAGATCGCGTCCATGGCTTCGGAGCATCCTTTCAAAGAAATTTTCACGTCCCTTCCTAAGCCAGGTGGTGGTGAATTTGGAAAGTTCTACAGCTTGC CTGCTCTTAACGATCCCCGTATCGATAAGCTTCCCTACTCCATCAGAATTCTGTTGGAATCTGCCATTCGTAATTGTGACAATTTCCAAGTTACCAAAGA AGATGTCGAGAAGATTGTTGACTGGGAAAATTCATCTCCTAAACAAGTAGAGATTCCCTTCAAGCCAGCTCGTGTTCTCTTGCAGGATTTTACTGGAGTA CCGGCTGTTGTTGACCTTGCTTCTATGCGTGATGCAATGGGCAACCTTGGCAGTGATCCCAGCAAGATCAATCCATTGGTCCCAGTTGATCTCGTAATTG ACCATTCAGTTCAAGTTGATGTAACAAGATCAGAAAATGCTGTACAAGCCAATATGGAACTTGAGTTTCAGCGAAACAAGGAGAGATTTGCTTTCCTGAA GTGGGGCTCCACTGCTTTCGATAACATGCTTGTTGTGCCTCCTGGTTCTGGCATTGTGCATCAGGTGAATCTTGAGTATCTTGGCCGAGTCGTGTTCAAC AAGGACGGTGTGATGTATCCGGATAGTGTGGTTGGAACTGATTCCCATACTACCATGATTGATGGACTAGGAGTTGCTGGCTGGGGAGTTGGAGGCATTG AAGCTGAGGCCACCATGTTGGGTCAGCCTATGAGCATGGTTCTCCCTGGAGTTGTTGGATTTAAGTTGTCTGGGAAATTGCGCAATGGTGTTACAGCCAC GGACTTGGTTCTAACCGTAACTCAAATGCTCAGGAAACACGGTGTTGTCGGCAAATTTGTCGAGTTCTACGGAGGAGGAATGAGTGAGCTATCCCTAGCT GATAGGGCAACTATAGCCAACATGTCACCCGAATATGGTGCAACAATGGGATTCTTCCCAGTAGATCGTGTCACTCTACAATATCTTAAGTTGACAGGAA GGAGCGATGAAACTGTTTCAATGATTGAGGCATATCTACGGGCAAATAACATGTTTGTTGACCATGATGAGCCACAACAAGAAAGAGTGTATTCATCATA CCTACAACTGGACCTTTCGGAGGTTGAGCCTTGTATTTCTGGACCCAAGAGACCTCATGATCGCGTTGCTCTTAGAGAGATGAAGTCAGACTGGCATTCT TGCCTTGATAGTAAAGTTGGATTCAAGGGCTTTGCCATACCAAAAGAAGCACAAGGTAAAGTGGCTAAGTTCATATTCAATGGGGAACCAGCAGAGCTTA AGCACGGCAGTGTTGTCATAGCTGCAATCACCAGCTGTACCAATACTTCAAATCCAAGTGTCATGCTCGGGGCTGGCCTTGTTGCCAAGAAGGCCCACGA ACTTGGCTTGAAGGTCAAGCCATGGGTAAAGACAAGTCTTGCTCCAGGCTCTGGAGTGGTTACAAAATATCTGCTCAAAAGTGGGTTGCAAGAGTATTTG AACCACCAGGGCTTCAACATTGTCGGATATGGTTGCACCACATGCATTGGTAACTCTGGAGATATTGAAGATTCTGTTGCTTCTGCTATCACAGAAAATG ACATTGTTGCCTCAGCTGTGCTTTCTGGAAACCGAAACTTCGAAGGTCGTGTTCATGCATTAACAAGAGCAAATTACCTGGCTTCTCCACCGCTAGTGGT TGCTTACGCCCTTGCTGGCACTGTTGACATCGACTTTGACAAAGAGCCCATCGGAAAAGGCAAGGATGGAAAAGATGTGTATTTCAGGGATATCTGGCCA ACTACAGAAGAAGTTGCACAGGCTGTTCAATCCAGCGTGTTGCCCGAAATGTTCAAAAGCACATACCAAGCCATCACAAAGGGCAACCCTATGTGGAACG ACCTTAGCGTACCGACTGCAACATCGTACTCCTGGGACCCTAACTCCACCTACATTCACGAGCCTCCTTACTTCAAGAACATGACTCTCGATCCTCCTGG AGCTCGCAAAGTGAAGGATGCCTACTGTCTGCTGAATTTCGGAGACAGCATCACGACAGATCACATCTCCCCGGCAGGAAGCATCCACAAGGACAGCCCC GCCGCCAAGTTCCTCCTCGAGAAGGGCGTTGACCGCAAGGACTTCAACTCCTACGGTAGTCGGCGTGGAAACGATGAGATCATGGCTAGAGGAACTTTCG CTAATATCCGCATCGTTAACAAGCTCCTGAATGGCGAAGTCGGCCCCAAGACCGTTCACGTACCCTCCGGAGAGAAGCTCTACGTGTTCGATGCTGCATC GAAATACAAGAACGAAGGACAGGACACCATCATTCTTGCTGGTGCTGAGTATGGAAGTGGAAGTTCCAGAGATTGGGCTGCCAAGGGTCCCATGCTATTG GGAGTGAAAGCAGTAATTGCAAAGAGCTTCGAGAGGATTCATCGCAGCAACTTGGTAGGAATGGGAATAATCCCACTCTGCTTCAAAGCCGGTCAAGATG CCGACAGTCTAGGCCTCACTGGTCACGAACGGTACACCATCGACCTCCCAAGCAACATCAGCGAAATTAGACCCGGCCAGGACGTCACTGTCACCACCGA TAACGGGAAGTCTTTCACCTGCACTGTCCGATTCGATACAGAGGTGGAATTGGAATATTTCAACCACGGAGGCATCCTGCCATACGTAATCCGCAACCTG ATGAAGAAGCAGTGA
AA sequence Show only first row Show all	>Lus10027165 pacid=23145551 polypeptide=Lus10027165 locus=Lus10027165.g ID=Lus10027165.BGIv1.0 annot-version=v1.0 MYINGSASLIRRASSKARNVSSLSASSAASGGGSSTAAAAAPKLAPGNGHQFQQQRSLSFFSAVRSLPRWSHGVNWRAQGAGGVRAHGRAAGIPVIEQFQ RKIASMASEHPFKEIFTSLPKPGGGEFGKFYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIVDWENSSPKQVEIPFKPARVLLQDFTGV PAVVDLASMRDAMGNLGSDPSKINPLVPVDLVIDHSVQVDVTRSENAVQANMELEFQRNKERFAFLKWGSTAFDNMLVVPPGSGIVHQVNLEYLGRVVFN KDGVMYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGGGMSELSLA DRATIANMSPEYGATMGFFPVDRVTLQYLKLTGRSDETVSMIEAYLRANNMFVDHDEPQQERVYSSYLQLDLSEVEPCISGPKRPHDRVALREMKSDWHS CLDSKVGFKGFAIPKEAQGKVAKFIFNGEPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLKVKPWVKTSLAPGSGVVTKYLLKSGLQEYL NHQGFNIVGYGCTTCIGNSGDIEDSVASAITENDIVASAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFDKEPIGKGKDGKDVYFRDIWP TTEEVAQAVQSSVLPEMFKSTYQAITKGNPMWNDLSVPTATSYSWDPNSTYIHEPPYFKNMTLDPPGARKVKDAYCLLNFGDSITTDHISPAGSIHKDSP AAKFLLEKGVDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLLNGEVGPKTVHVPSGEKLYVFDAASKYKNEGQDTIILAGAEYGSGSSRDWAAKGPMLL GVKAVIAKSFERIHRSNLVGMGIIPLCFKAGQDADSLGLTGHERYTIDLPSNISEIRPGQDVTVTTDNGKSFTCTVRFDTEVELEYFNHGGILPYVIRNL MKKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05710		ACO3	aconitase 3 (.1)		Lus10027165 [exp]	0	1
AT5G60700			glycosyltransferase family pro...		Lus10037396 [exp]	1.4	0.9627
AT3G52990			Pyruvate kinase family protein...		Lus10035581 [exp]	1.7	0.9679
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10005962 [exp]	2.4	0.9438
AT5G04590		SIR	sulfite reductase (.1)		Lus10030131 [exp]	2.8	0.9497
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Lus10012738 [exp]	3.2	0.9332
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10029796 [exp]	4.2	0.9521
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032632 [exp]	4.9	0.9311
AT3G52990			Pyruvate kinase family protein...		Lus10008644 [exp]	4.9	0.9363
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012076 [exp]	5.8	0.9100
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10026519 [exp]	5.9	0.9472

Compare expression of checked genes

Lus10027165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.