Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23780 1398 / 0 NRPE2, DMS2, DRD2, NRPD2a DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) AT3G18090 1279 / 0 NRPD2B nuclear RNA polymerase D2B (.1) AT4G21710 365 / 9e-108 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) AT5G45140 248 / 2e-67 NRPC2 nuclear RNA polymerase C2 (.1) AT1G29940 209 / 6e-55 NRPA2 nuclear RNA polymerase A2 (.1) ATCG00190 59 / 1e-08 ATCG00190.1, RPOB RNA polymerase subunit beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039677 [exp] 1102 / 0 AT3G23780 696 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10015446 [exp] 353 / 2e-103 AT4G21710 2298 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10011182 [exp] 352 / 9e-103 AT4G21710 2293 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10028778 [exp] 320 / 3e-91 AT5G45140 1711 / 0.0 nuclear RNA polymerase C2 (.1) Lus10017504 [exp] 298 / 1e-84 AT5G45140 1652 / 0.0 nuclear RNA polymerase C2 (.1) Lus10026157 [exp] 197 / 5e-51 AT1G29940 1574 / 0.0 nuclear RNA polymerase A2 (.1) Lus10011322 [exp] 108 / 4e-24 AT5G45140 468 / 2e-153 nuclear RNA polymerase C2 (.1) Lus10012207 [exp] 74 / 1e-15 AT5G45140 150 / 6e-44 nuclear RNA polymerase C2 (.1) Lus10039408 [exp] 45 / 0.0002 AT5G45140 129 / 9e-34 nuclear RNA polymerase C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G019100 [exp] 1497 / 0 AT3G23780 1694 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.004G043200 [exp] 358 / 2e-105 AT4G21710 2271 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Potri.015G003000 [exp] 253 / 5e-69 AT5G45140 1826 / 0.0 nuclear RNA polymerase C2 (.1) Potri.006G263900 [exp] 231 / 9e-69 AT3G23780 253 / 5e-77 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.001G030750 [exp] 192 / 9e-50 AT1G29940 1674 / 0.0 nuclear RNA polymerase A2 (.1) Potri.013G142232 [exp] 58 / 4e-08 ATCG00190 2015 / 0.0 RNA polymerase subunit beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04567 [flax] [poplar] RNA_pol_Rpb2_5 RNA polymerase Rpb2, domain 5 PF04566 [flax] [poplar] RNA_pol_Rpb2_4 RNA polymerase Rpb2, domain 4 PF04561 [flax] [poplar] RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2 PF04565 [flax] [poplar] RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3 PF04563 [flax] [poplar] RNA_pol_Rpb2_1 RNA polymerase beta subunit PF04560 [flax] [poplar] RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7
Representative CDS sequence Show only first row Show all	>Lus10027166 pacid=23145485 polypeptide=Lus10027166 locus=Lus10027166.g ID=Lus10027166.BGIv1.0 annot-version=v1.0 ATGGGAAAGCCCGATATGATGGAGGTAGAGGAAGTGGGCACGAGTAACGGAAACGCGGCCCCCGATGTATTTGATGACTTTGATATCGACGATCTATTCG ACGACGACGACGGTCAAGAGTTCACCGATTTTTCAACTTTGAGAGGGATTGGGGAGGTGAACTTGAAGAACCTGTGTAAAAGGGCAGCAACTCAGTTTTT CAACGAGTATGGACTCATCAGTCATCAGATAAACTCGTACAATGACTTCATCCACTATGGCCTCCAACGGGTGTTTGATTCCTTTGGTGAGATACTCGTT GAGCCTGGGTATGACCCTTCCAAGAAAGGGGAAGGTGACTGGAGATATGCTTCGGTTAAGTTTGGGAAGGTTAGCCTTGAAAAGCCTAACTTCTGGGCTC CATCGTTGGAATCTGAGAACAACGAGCGTAAGATGCTCCCCAGGGATGCTCGCCTGCAGAATATGACCTACGCTGCTAGGATCAAAGTTCAAGTCACGTT CAAGGTATATACACAAAAGATTATTGCAAGTGACAAGTTTAAGACAGGGCAAGATAAAATTGTTGATAAAGAGATTCTCAAAGACGAGACGGAAGATATG ATAATAGGGAGTATCCCTGTGATGGTGAAGTCTGACCTCTGTTGGATGAAGACGGAAGATAAAGGTGATTGCGACTTTGATCAAGGAGGCTACTTTGTGA TAAAGGGTGCTGAGAAGGTTTTCATTGCTCAAGAGCAAACTTGTATGAAGAGACTATGGGTAGTGAGTAGTCCCTGTTGGACGGTGGGATACAAGTCAGA GGTGAAGAGGAACAGGCTGATTGTTAAGCTATCAGGTTCTGGTAAACCTGGAGAAAAGAAGGTGCTTACGGTTTATTTCCTGTCAACCGAGGTGCCCTTG TGGCTATTGTTCTTTGCTCTCGGTGTTAAATCAGACAAAGAAGTGGTGGATCTGATAGATTTGGACAAGGTTGATCAAAGTGTTACAAATGCTCTCTTTG CATCGATTCAAGAAGCTGACGAATATGAGAGTTTTCGAAAGGACAGGAAAGCATTGGTGTATTTGGATGAAATCATTCAGAAGACCCAGTTCCCACCTAG TGAGCGCATGGATGACTGCATTCAGGCGTATCTTTTCCCGTGTCTCCACCATCCTAAACAAAAGGCTCAGTTTCTAGGTTATATGGTGAAGTGCCTTTTA ATGGCCTCTACTGGTCACAGGAGACCTGATAATAGAGATGATTTCAGAAACAAGAGACTAGAGCTTGCTGGCGAGTTGCTAGAGAGGGAGCTGAAAGCGC ACATATTAAATGCGCAGAAACGAATGAAGAAGGCCCTGCAGAAAGCCCTCGATGATGGCCGTCTTATACAACCAATCGCTCTATATCTCGATGCTTCAGT AGTAACCAACGGTTTATCTAGAGCATTCTCCACTGGAGCATGGTGTCATCCGTGGAGGAAGATGGAAAGGGTATCGGGGGTGGTAGCAAATCTCGGCCGG ACAAATCCACTGCAGACAGTAATGGATTTGCGAAGAACCCGCCAGCAGGTCTTGTATACTGGGAAAGCTGGAGATACTAGATACCCGCACCCTTCTCACT GGGGTAGAGTTTGCTTTCTTTCCACTCCGGACGGTGAAAACTGTGGCCTAGTGAAGAATCTATCCATCACAGGCATTGTCAGTACAACAATGATGACTCC TTTGATTGACAAGCTAACAAACTGTGGGATGGAGCTACTTTCTGAAGATTACACCACGGTGGAAGGCAACTTTAAGGTGTTTCTTAATGGAGAATGGGTG GGAGTTTGCGGAAACTCTCACTCATTCGTGACAAAACTAAGGTCCATGCGGCGCAGAAGGAGGCTGCCACATCAGGTGGAAATCAAAAGGGACGAATTCC AGAAAGAAGTGCGTATCTTCTCTGATGCCGGAAGGATTCTACGCCCTCTCCTTGTCGTAGCAAACTTGGAAAAGATAACTTCTTTCAAAGGAGAGAGCTA TACCTTCCAGTCACTTTTAGACAAAGGGATCATCGAGTTCATTGGGACCGAAGAGGAAGAGGATTGCTCTACGGCATGGGGAATCAAATTCCTACTAAGA CCATCGGCTGCTGATGATGATGGAAAGAAAGCTGTCAATGTCAAGTATACACACTGCGAACTTGACATGTCGTTTCTCTTGGGCGTAAGCTGCGGAATAG TACCCTTTGCCAACCACGACCATGCGAGGAGAGTTCTGTACCAGTCACAGAAACACTGCCAGCAAGCCATCGGATATTCCACGACGAATCCGAACATCAG GACTGACACATTGACACATCAGCTGTTTTATCCTCAGAGGCCTCTCTTCCGGACTGCCACGTCAGATTGCCTCGGAGGAGGACCTTTGGATCCCAGGCCT GAGCTCTACAACGGTCAGAACTGCATCGTGGCGGTGAATGCCCACATGGGGTATAACCAAGAAGATTCCTTGGTGATGAATAGGGCTTCACTGGAGCGTG GAATGTTCCGAACCGAGCATGTGAGGAGTTACAAGGCTGAGGTGGACAATAAGGAGGAGAAGAGGAGAAAGTCCGACGATGCTGTCAACTACGGAAAGGT GCAGAGCAAGTTCGGTCGGGTCGACAGTTTGGACGATGACGGTTTCCCTTATATCGGAGCTGATCTGCAGAGTGGTGATATCGTCGTCGGGAAGTGTAGC GAGTCCGGAGTTGATTGTAGTATCAAGCTGAAGCACACCGAAAGAGGCAAGGTTCAGAAGGTTGTTCTGTCTGCTAATGACGAGGGGAAGAACTTCGCTG TGGTATCGTTGAGACAGGCTGCTTTGGCGAAAGGAATAGCTTCCGGTGGCAAATTTAAATCCGCAACTCCCTTCTCTGCCGTCACTGTGGAATCCATTAC AGACCAGCTGCACAGGGCCGGATTCTCGAGATGGGGAAGCGAGAGGGTATACAACGGCCGAACCGGAGAAATGGTTGACTCTCTCATCTTCATGGGCCCG ACCTTCTACCAACGCCTAGTCCACATGGCAGAGGACAAAGTAAAGTTCAGAAACACCGGAGCAGTCCACCCACTCACGAGGCAGCCGGTTGCAGACCGAA AGCGCTTCGGTGGGATCAAGTTCGGGGAAATGGAGCGCGACTGCCTGATAGCTCATGGAGCAGCAGCAAACTTGTACGAGCGAGTCTACACGCTGAGCGA TTCCTCCCAGATCCACATCTGCCAGGGCTGCAAGAACATAGCCAATGTGATTCAGCGATCGGTCCCGAATGGCCACAAAATTCGGGGGCCTTACTGCCGG GTCTGCAGCTCCGCCGATAAGATCGTGAAGGTGAATATTCCGTATGGGGCGAAGCTGTTGTGCCAGGAGCTTTTCAGCATGGGTATCAACCTGAAGTTCG ACACCAAGATATGTTGA
AA sequence Show only first row Show all	>Lus10027166 pacid=23145485 polypeptide=Lus10027166 locus=Lus10027166.g ID=Lus10027166.BGIv1.0 annot-version=v1.0 MGKPDMMEVEEVGTSNGNAAPDVFDDFDIDDLFDDDDGQEFTDFSTLRGIGEVNLKNLCKRAATQFFNEYGLISHQINSYNDFIHYGLQRVFDSFGEILV EPGYDPSKKGEGDWRYASVKFGKVSLEKPNFWAPSLESENNERKMLPRDARLQNMTYAARIKVQVTFKVYTQKIIASDKFKTGQDKIVDKEILKDETEDM IIGSIPVMVKSDLCWMKTEDKGDCDFDQGGYFVIKGAEKVFIAQEQTCMKRLWVVSSPCWTVGYKSEVKRNRLIVKLSGSGKPGEKKVLTVYFLSTEVPL WLLFFALGVKSDKEVVDLIDLDKVDQSVTNALFASIQEADEYESFRKDRKALVYLDEIIQKTQFPPSERMDDCIQAYLFPCLHHPKQKAQFLGYMVKCLL MASTGHRRPDNRDDFRNKRLELAGELLERELKAHILNAQKRMKKALQKALDDGRLIQPIALYLDASVVTNGLSRAFSTGAWCHPWRKMERVSGVVANLGR TNPLQTVMDLRRTRQQVLYTGKAGDTRYPHPSHWGRVCFLSTPDGENCGLVKNLSITGIVSTTMMTPLIDKLTNCGMELLSEDYTTVEGNFKVFLNGEWV GVCGNSHSFVTKLRSMRRRRRLPHQVEIKRDEFQKEVRIFSDAGRILRPLLVVANLEKITSFKGESYTFQSLLDKGIIEFIGTEEEEDCSTAWGIKFLLR PSAADDDGKKAVNVKYTHCELDMSFLLGVSCGIVPFANHDHARRVLYQSQKHCQQAIGYSTTNPNIRTDTLTHQLFYPQRPLFRTATSDCLGGGPLDPRP ELYNGQNCIVAVNAHMGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVDNKEEKRRKSDDAVNYGKVQSKFGRVDSLDDDGFPYIGADLQSGDIVVGKCS ESGVDCSIKLKHTERGKVQKVVLSANDEGKNFAVVSLRQAALAKGIASGGKFKSATPFSAVTVESITDQLHRAGFSRWGSERVYNGRTGEMVDSLIFMGP TFYQRLVHMAEDKVKFRNTGAVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLYERVYTLSDSSQIHICQGCKNIANVIQRSVPNGHKIRGPYCR VCSSADKIVKVNIPYGAKLLCQELFSMGINLKFDTKIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10027166 [exp]	0	1
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10029695 [exp]	1.0	0.9351
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031477 [exp]	3.2	0.9286
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025704 [exp]	4.2	0.9265
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10004893 [exp]	4.9	0.9223
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10031129 [exp]	5.3	0.9337
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10023443 [exp]	6.9	0.9298
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10040321 [exp]	7.0	0.9242
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10008634 [exp]	10.2	0.8898
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015777 [exp]	11.5	0.8868
AT1G65440		GTB1	global transcription factor gr...		Lus10003130 [exp]	11.6	0.8967

Compare expression of checked genes

Lus10027166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.