Plant FIBer expression Database

Lus10027167 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G21680 47 / 1e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039676
[exp]
149 / 1e-47 AT3G10120 56 / 2e-10 unknown protein
Lus10015117
[exp]
44 / 4e-06 AT5G03890 44 / 3e-06 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G229300
[exp]
53 / 2e-09 AT3G21680 42 / 2e-05 unknown protein
Potri.014G153200
[exp]
44 / 3e-06 AT3G21680 45 / 8e-07 unknown protein
Potri.006G213100
[exp]
44 / 4e-06 AT3G10120 122 / 9e-36 unknown protein
Potri.016G079700
[exp]
39 / 0.0004 AT3G10120 114 / 1e-32 unknown protein
PFAM info
Representative CDS sequence
>Lus10027167 pacid=23145563 polypeptide=Lus10027167 locus=Lus10027167.g ID=Lus10027167.BGIv1.0 annot-version=v1.0
ATGGGAAATTGCTTAGTGGTTCACAACGACAGCCGGATCGTGTCCCTCTCGCCACAGTACGACGAGAAACCGAAGCATTTCGACGAGAATCGGAGCAAGA
AGCAGAGGAACAAGAAGAAGCAGACCAACAAGACTGTGAGGTTCAGTGTTGATGATGATGATGGTTGTAAGGAAAGATCGGACGGTGTGAGGAGGATTCG
AGTTCTCGTGACGAAACAGGAGCTGCGGGAAATCCTGATGCAGCACGGAAACGAGTTGAAGTTGGAGCAGATTGTTAAGGCTGTCAAGTGTAGAAGAAGG
AATGTTGTTGATGGTGATGGTGATTGTGAAGAAGAAGGTGGAGGATGGAGGCCGACGTTAGAGAGCATACCGGAAAATCATTAG
AA sequence
>Lus10027167 pacid=23145563 polypeptide=Lus10027167 locus=Lus10027167.g ID=Lus10027167.BGIv1.0 annot-version=v1.0
MGNCLVVHNDSRIVSLSPQYDEKPKHFDENRSKKQRNKKKQTNKTVRFSVDDDDGCKERSDGVRRIRVLVTKQELREILMQHGNELKLEQIVKAVKCRRR
NVVDGDGDCEEEGGGWRPTLESIPENH

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G10120 unknown protein Lus10027167
[exp]
0 1
AT4G15560 AtCLA1, DXS, DX... 1-DEOXY-D-XYLULOSE 5-PHOSPHATE... Lus10002663
[exp]
1.4 0.9591
AT1G06290 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) Lus10016249
[exp]
2.4 0.9561
AT4G23430 AtTic32-IVa translocon at the inner envelo... Lus10032282
[exp]
4.6 0.9473
AT2G43590 Chitinase family protein (.1) Lus10010861
[exp]
5.5 0.9295
Lus10005096
[exp]
5.7 0.9393
AT2G30130 AS2 PCK1, LBD12, AS... PEACOCK 1, Lateral organ bound... Lus10031285
[exp]
5.7 0.9319
AT4G04720 CPK21 calcium-dependent protein kina... Lus10002075
[exp]
6.6 0.9433
AT2G03760 AtSOT12, AtSOT1... ARABIDOPSIS THALIANA SULFOTRAN... Lus10031623
[exp]
7.1 0.9418
AT5G39820 NAC ANAC094 NAC domain containing protein ... Lus10030478
[exp]
7.2 0.9311
AT2G29940 ABCG31, PDR3, A... ATP-binding cassette G31, plei... Lus10009398
[exp]
7.3 0.9180

Lus10027167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.