Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21690 595 / 0 MATE efflux family protein (.1) AT1G61890 558 / 0 MATE efflux family protein (.1) AT1G11670 550 / 0 MATE efflux family protein (.1) AT4G21910 502 / 4e-175 MATE efflux family protein (.1.2.3.4) AT4G21903 493 / 1e-171 MATE efflux family protein (.1.2) AT3G26590 382 / 4e-128 MATE efflux family protein (.1) AT5G38030 379 / 4e-127 MATE efflux family protein (.1) AT1G47530 377 / 1e-126 MATE efflux family protein (.1) AT3G59030 377 / 2e-126 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) AT1G12950 374 / 6e-125 RSH2 root hair specific 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027169 [exp] 606 / 0 AT3G21690 740 / 0.0 MATE efflux family protein (.1) Lus10002067 [exp] 557 / 0 AT3G21690 702 / 0.0 MATE efflux family protein (.1) Lus10001142 [exp] 554 / 0 AT3G21690 712 / 0.0 MATE efflux family protein (.1) Lus10020049 [exp] 524 / 0 AT3G21690 640 / 0.0 MATE efflux family protein (.1) Lus10039673 [exp] 520 / 0 AT4G21910 650 / 0.0 MATE efflux family protein (.1.2.3.4) Lus10042130 [exp] 378 / 6e-127 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 375 / 2e-125 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10033596 [exp] 374 / 7e-125 AT3G59030 759 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Lus10006206 [exp] 374 / 9e-125 AT3G26590 664 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153100 [exp] 617 / 0 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 576 / 0 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 575 / 0 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 566 / 0 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 566 / 0 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 566 / 0 AT1G11670 669 / 0.0 MATE efflux family protein (.1) Potri.011G002600 [exp] 535 / 0 AT3G21690 610 / 0.0 MATE efflux family protein (.1) Potri.011G002500 [exp] 516 / 0 AT3G21690 613 / 0.0 MATE efflux family protein (.1) Potri.011G002400 [exp] 516 / 2e-180 AT3G21690 636 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 366 / 1e-121 AT3G26590 681 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10027168 pacid=23145350 polypeptide=Lus10027168 locus=Lus10027168.g ID=Lus10027168.BGIv1.0 annot-version=v1.0 ATGGCCGCAAATGAAGAGCCGTTGTTGACGTCGGCGGCCAGGGCCGATGAGCTGGAGACTGTGCTCTCCGACCAAACCCTCCCGTTACTCGAACGGGTCA AGGTAGCTACGGTAGTGGAATCGAAGCTCCTCCTCAACATTGCGGCCCCGTCGGTGGCCGGTTACATGATCAACTACGTCATGGGGATGTCCACCCAGGT CTTCGCCGGCCAGCTCGGTAACCTCCAGCTCGCCGCCTCCTCCCTTGGTATCTCCGGCGTCCAGATGTTCTCGTACGGTCTCCTGCTCGGAATGGGGAGC GCGGTGGAGACATTATGTGGCCAAGCGTACGGAGCCCAAAAGTACGAAATGCTCGGAATATACCTCCAACGCTCAACGATCCTCCTCTCCTTGACCGGGG TCGGACTTTCAGTCATCTACATCTTCTCCAAACCAATCTTAATACTCATCGGCCAGTCACCGGAGATAGCCTCCGCCTGCGCAGTCTTCATGTACGGCCT GATCCCGGAGATCTTCGCCTGCGCGGTCAACTTCCCCGTCCAAAAATTTCTCCAGGCGCAGAGCATCGTGGCCCCCACCGCCTACATATCCGCCGCCACG CTAGTGGTCCACGTGGCACTGAGCTGGCTGGCTGTGTGTCGTATGGGCTTGGGCCTTGCGGGCGCCTCGGCCGTGCTAAGCCTGTCGTGGTCGATCGTGG CGGCGGGGCAGTTTGGGTATATCGCGTGGGGTAAGGAGTGTCGGGACACGTGGCGGGGGTTCAGTAGCCAGGCGTTTACCGGGCTTTGGGGATTTTTTAA ACTGTCGGCATCGTCGGCTGTTATGATGTGTTTGGAACTTTGGTATCTTCAGATAATGGTTTTGATTTCCGGGCTCTTACCCGACCCGAAATTGACTCTG GCTGCTCTTGCTGTTTGCATGATGATATTGGATCTTGTAGTCATGATGTCCGTTGGATTCAACGCAGCCGCAAGTGTAAGAGTGAGCAACGAGCTTGGAG CCGGGAACCCGAAATCCGCTGCATTTTCGGTCCTGATCTCCACCTCAATGTGCACAATCATCTCCCTGGTGGCCGCCATCGTGGTGATGGCCACCCGACA CGTCATCAGCTATGCCTTCACCCGTGGAGAAGACGTAGCTAGTAAGGTGTCCGAACTCTGCCCTCTACTAGCACTTGCGATAATCCTCAATGGGATCCAA TGTGTCCTCTCTGGTGTCGCTGTGGGATGCGGATGGCAAGAGTTCGTAGCGTACGTGAACGTGGGTAGCTACTATGTGGTCGGAATTCCGATGGCCGTGG TTCTTGGTTTCTACTTCAATCTTGGTGTTATGGGGGTATGGTATGGTATGGTTGGTGGGATGGCATTGCAAACTGTGATTTTGGTTTGGGTCACAATCCG AACCGATTGGGAGAAAGAGGTGGAAGATGCCACAAAAAGGCTCGACTCCTGGGATGAGAAGAGGGAACCCAATTTGATCGGTTGA
AA sequence Show only first row Show all	>Lus10027168 pacid=23145350 polypeptide=Lus10027168 locus=Lus10027168.g ID=Lus10027168.BGIv1.0 annot-version=v1.0 MAANEEPLLTSAARADELETVLSDQTLPLLERVKVATVVESKLLLNIAAPSVAGYMINYVMGMSTQVFAGQLGNLQLAASSLGISGVQMFSYGLLLGMGS AVETLCGQAYGAQKYEMLGIYLQRSTILLSLTGVGLSVIYIFSKPILILIGQSPEIASACAVFMYGLIPEIFACAVNFPVQKFLQAQSIVAPTAYISAAT LVVHVALSWLAVCRMGLGLAGASAVLSLSWSIVAAGQFGYIAWGKECRDTWRGFSSQAFTGLWGFFKLSASSAVMMCLELWYLQIMVLISGLLPDPKLTL AALAVCMMILDLVVMMSVGFNAAASVRVSNELGAGNPKSAAFSVLISTSMCTIISLVAAIVVMATRHVISYAFTRGEDVASKVSELCPLLALAIILNGIQ CVLSGVAVGCGWQEFVAYVNVGSYYVVGIPMAVVLGFYFNLGVMGVWYGMVGGMALQTVILVWVTIRTDWEKEVEDATKRLDSWDEKREPNLIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21690			MATE efflux family protein (.1...		Lus10027168 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Lus10020052 [exp]	1.0	0.9615
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10009799 [exp]	3.5	0.9522
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10002243 [exp]	4.6	0.9282
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10015906 [exp]	6.7	0.8933
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10009075 [exp]	6.9	0.9454
AT1G17200			Uncharacterised protein family...		Lus10042471 [exp]	7.1	0.9522
AT4G29990			Leucine-rich repeat transmembr...		Lus10025849 [exp]	7.3	0.9328
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10026461 [exp]	9.2	0.9194
AT1G54730			Major facilitator superfamily ...		Lus10033815 [exp]	11.5	0.9215
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10000592 [exp]	11.8	0.9252

Compare expression of checked genes

Lus10027168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.