Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21690 691 / 0 MATE efflux family protein (.1) AT1G61890 600 / 0 MATE efflux family protein (.1) AT1G11670 593 / 0 MATE efflux family protein (.1) AT4G21910 553 / 0 MATE efflux family protein (.1.2.3.4) AT4G21903 516 / 3e-180 MATE efflux family protein (.1.2) AT1G47530 422 / 7e-144 MATE efflux family protein (.1) AT5G38030 421 / 4e-143 MATE efflux family protein (.1) AT3G59030 413 / 8e-140 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) AT1G12950 413 / 9e-140 RSH2 root hair specific 2 (.1) AT3G26590 412 / 1e-139 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039673 [exp] 769 / 0 AT4G21910 650 / 0.0 MATE efflux family protein (.1.2.3.4) Lus10002067 [exp] 651 / 0 AT3G21690 702 / 0.0 MATE efflux family protein (.1) Lus10001142 [exp] 646 / 0 AT3G21690 712 / 0.0 MATE efflux family protein (.1) Lus10027168 [exp] 614 / 0 AT3G21690 643 / 0.0 MATE efflux family protein (.1) Lus10020049 [exp] 588 / 0 AT3G21690 640 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 414 / 1e-140 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10017639 [exp] 412 / 3e-139 AT3G59030 755 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Lus10033596 [exp] 410 / 1e-138 AT3G59030 759 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Lus10006206 [exp] 409 / 3e-138 AT3G26590 664 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153100 [exp] 708 / 0 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 677 / 0 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 671 / 0 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 666 / 0 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 661 / 0 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 637 / 0 AT1G11670 669 / 0.0 MATE efflux family protein (.1) Potri.011G002600 [exp] 635 / 0 AT3G21690 610 / 0.0 MATE efflux family protein (.1) Potri.011G002400 [exp] 603 / 0 AT3G21690 636 / 0.0 MATE efflux family protein (.1) Potri.011G002500 [exp] 594 / 0 AT3G21690 613 / 0.0 MATE efflux family protein (.1) Potri.002G055100 [exp] 425 / 1e-144 AT3G59030 719 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10027169 pacid=23145443 polypeptide=Lus10027169 locus=Lus10027169.g ID=Lus10027169.BGIv1.0 annot-version=v1.0 ATGGCATCATCTCCAAACGGCGGCGACCTCACACAGCCTTTGGTGGAGGAGCCACAGCCGCCGATGCCCAAATCCCCAACGATGCCGGAGGCTGCGGCGC CACCGCCGCACCACGGCAGCAACGAGCTGGAGAATGCCTTGTCGGACACGAGTAAGCCGTTCGGAGACAGGTTAAAGAGAGCCACCTGTATCGAGTCGAA GCTCCTTTTCCACCTAGCCGCCCCCGCCGTCATTGTCTACATGATTAACTACCTCATGTCCATGTCGACCCAAATCTTCGCCGGCCATTTGGGCAACCTC GAGCTCGCCGCCGCTTCCTTGGGTAACACCGGCATCCAAGTCTTCGCCTACGGCCTCATGTTGGGAATGGGGAGCGCGGTGGAGACACTATGTGGCCAAG CATACGGAGCCCAAAAGTACAAAATGCTCGGAATCTACCTCCAACGGTCGACCATCCTCCTAACCCTAACGGGCATCCTCCTAACCCTCCTCTACATCTT CTCCAAACCAATCCTAATCCTATTAGGAGAATCCCCCGAAATCGCCTCCGCCGCCTCGATCTTCGTCTACGGCCTAATCCCGCAGATATTCGCCTACGCC GTCAACTTCCCCATCCAGAAGTACCTCCAGGCGCAGAGCATCGTGGCCCCGAGTGCGTACATCTCGGTTTTCACGCTCGGGATCCACGTTGTGCTCAGCT ACGTGGCGATCTACAAGCTCGGGATGGGCCTGTTAGGCGCGTCGCTGGTGCTGAGCTTGTCGTGGTGGATCGTCGTGGCGGCTCAGTTTGTGTACATATT GAAGAGCAGTAAGTGTAGGTACACGTGGGATGGGTTCAGCTCGGAGGCTTTTGTCGGGTTGGGGAGCTTTTTTAAGCTTTCGGCGGCGTCGGCTGTTATG CTGTGCTTGGAGACTTGGTACTTCCAGATACTTGTGCTCATTGCTGGGTTGCTTCCTGACCCTGAACTCGCTCTTGACTCGCTTTCGGTTTGCATGACAA TCTCCGGGTGGGTGTTCATGATCTCCGTCGGATTTAACGCCGCAGCAAGTGTGAGGGTTAGCAACGAGCTGGGAGCAGGGCATCCGAAATCGGCGTCTTT CTCCGTGACGATGGTGACCTCGATGTCGTTCGTCATCGCAGTCATCTCGGCCGCCGTGATTCTAGCCTTCCGTAACGTCATTAGCTACATCTTCACCGAT GGGGAGACGGTGGCCGCCGCAGTCTCCGACCTCTGCCCGCTCCTCGCCATCACCTTGGTCCTTAACGGCATCCAGCCTGTTTTATCCGGTGTGGCTGTTG GATGTGGATGGCAAGCGTTTGTTGCGTACGTCAACGTTGGTTGCTACTACGTGATTGGAATCCCGCTCGGGGTTTTCTTTGGTTTCTATCTCGATTTTGG TGCTAAGGGAATATGGGCGGGGATGATAGGAGGGACAGCATTGCAGACGGTTATATTGTTGTGGGTGACGTTCAAGACGAATTGGGAGAAAGAGGTGGAA GAGTCATTGAATAGATTGAACAAGTGGGACGAGAAGAAGCAACCGCTCCTCGAATGA
AA sequence Show only first row Show all	>Lus10027169 pacid=23145443 polypeptide=Lus10027169 locus=Lus10027169.g ID=Lus10027169.BGIv1.0 annot-version=v1.0 MASSPNGGDLTQPLVEEPQPPMPKSPTMPEAAAPPPHHGSNELENALSDTSKPFGDRLKRATCIESKLLFHLAAPAVIVYMINYLMSMSTQIFAGHLGNL ELAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGAQKYKMLGIYLQRSTILLTLTGILLTLLYIFSKPILILLGESPEIASAASIFVYGLIPQIFAYA VNFPIQKYLQAQSIVAPSAYISVFTLGIHVVLSYVAIYKLGMGLLGASLVLSLSWWIVVAAQFVYILKSSKCRYTWDGFSSEAFVGLGSFFKLSAASAVM LCLETWYFQILVLIAGLLPDPELALDSLSVCMTISGWVFMISVGFNAAASVRVSNELGAGHPKSASFSVTMVTSMSFVIAVISAAVILAFRNVISYIFTD GETVAAAVSDLCPLLAITLVLNGIQPVLSGVAVGCGWQAFVAYVNVGCYYVIGIPLGVFFGFYLDFGAKGIWAGMIGGTALQTVILLWVTFKTNWEKEVE ESLNRLNKWDEKKQPLLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21690			MATE efflux family protein (.1...		Lus10027169 [exp]	0	1
AT2G37470			Histone superfamily protein (....		Lus10023753 [exp]	2.0	0.9291
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10031968 [exp]	2.8	0.8947
AT5G49690			UDP-Glycosyltransferase superf...		Lus10027850 [exp]	3.7	0.9316
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10001259 [exp]	4.5	0.8865
AT3G48990			AMP-dependent synthetase and l...		Lus10039232 [exp]	6.6	0.8850
AT3G13840	GRAS		GRAS family transcription fact...		Lus10000531 [exp]	7.7	0.8480
AT5G04590		SIR	sulfite reductase (.1)		Lus10030131 [exp]	8.3	0.9213
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10022737 [exp]	10.9	0.8970
AT1G75560			zinc knuckle (CCHC-type) famil...		Lus10035476 [exp]	11.1	0.8543
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10020725 [exp]	12.2	0.9004

Compare expression of checked genes

Lus10027169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.