Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32400 884 / 0 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT1G05200 785 / 0 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT1G42540 780 / 0 ATGLR3.3 glutamate receptor 3.3 (.1) AT3G51480 751 / 0 ATGLR3.6 glutamate receptor 3.6 (.1) AT4G35290 747 / 0 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G17260 746 / 0 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT2G32390 719 / 0 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT2G29120 435 / 4e-138 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 428 / 3e-135 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29100 406 / 4e-127 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039672 [exp] 1653 / 0 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10031560 [exp] 1318 / 0 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10015118 [exp] 1300 / 0 AT2G32400 987 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10027171 [exp] 806 / 0 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10039671 [exp] 798 / 0 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10012245 [exp] 790 / 0 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10035980 [exp] 756 / 0 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10026553 [exp] 715 / 0 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10026552 [exp] 701 / 0 AT4G35290 1025 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G229900 [exp] 1098 / 0 AT2G32400 955 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Potri.005G253800 [exp] 828 / 0 AT1G42540 1180 / 0.0 glutamate receptor 3.3 (.1) Potri.005G102700 [exp] 797 / 0 AT3G51480 1169 / 0.0 glutamate receptor 3.6 (.1) Potri.002G007400 [exp] 796 / 0 AT1G42540 1178 / 0.0 glutamate receptor 3.3 (.1) Potri.009G168300 [exp] 793 / 0 AT4G35290 1127 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Potri.014G152200 [exp] 767 / 0 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.002G230000 [exp] 762 / 0 AT1G05200 1198 / 0.0 glutamate receptor 3.4 (.1.2) Potri.005G102600 [exp] 743 / 0 AT3G51480 1012 / 0.0 glutamate receptor 3.6 (.1) Potri.018G013200 [exp] 472 / 5e-152 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 462 / 3e-148 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10027170 pacid=23145463 polypeptide=Lus10027170 locus=Lus10027170.g ID=Lus10027170.BGIv1.0 annot-version=v1.0 ATGAAGCTTCCGAGTGTTAAAGCTGTAGTGTTTGTTTTCATTGTTTATGCTGAGTTCGCCTTCTGCCAACAAAGGCCTCAAGTAGTGAATATTGGCGCGG TGTTCATGTTTGAATCTGTTATTGGGAGAGCTGCAATGCCTGCTATCAATGCTGCAATAGCTGATGTTAATAAGGATAAGACTGTTCTTAATGGTACACG CCTCAATTTGATGATGGAGGATTCTAATTGCAGCGTCTTCTTTGGCTCAGTTGTAGCTCTTCGAATGATAGAGAGACAAGTGGTATCCCTGATAGGCCCA CTATCTTCCGGAATAGCTCATATGGTTTCTGAAGTTGCAAATGGCCTTCAAGTCCCTCTTATATCCTTTGCAGCTACTGATCCAACGCTGTCCGCCCTTC AGTTTCCTTACTTCGTGCGGACTACACTAAGCGACTCGTACCAGATGGCTGCCTTAGCCGATCTCGTCGAGTTTCACGAATGGAAAGAGGTCATTGTCAT CTTCACAGACAATGATCACGGCAGAAATGGGGTATCCGCCCTGGAAGATCAGCTTAACAAGAGAATGATAAGAGTTGCTTCCAAGATGCGGTTAAGAGCC CGGTTCAACGACAGTGATGTCATGGATGTTCTCAACAGTACCAAGCTACTCGGCCCTCGCGTTTACATTGTTCACTCCTATCAAGATCCTGACTTGAGAA TCTTCAAAATGGCACAGGAGCTCGAAATGATGACTGCCAATTTTGTCTGGCTCGCGACCGATTGGCTGGCTACTACCTTGGACTCGTTCACTCCCTCACA ACGAAGATCATCGTTACTCAGTCTTGTTCAAGGGGTGGTTGGACTTCGGCAGCATACTCCCGAGTCGACTCGAAAGAAGGATTTCGTGTCTCGGTGGAAG GATATGCAAAGAAAGGGGCTGGTGAATACTGAGCTGAATGCCTATGGATTTCAGGCTTATGACACAGTTTGGCTACTTGCATATGCAATTGATAAGCTCA TTAATGGAAAAGCTAACAACTTTACCTTCTCTTCAAGAGATAGACTTCTTGATGATACACAGAAATTCCAGCTGGGGCATCTTAAGGTTTTCAACGGTGG AGCTGACCTTCTGAAGATCATATTGCAGTCGGATTTCACCGGTTTGAGTGGTCGTGTTCGGTTTAATGCTGACCGGAATGTACTAGACCGTGGCTATGAA GTCGTTAATGTTAATAACATGTCTATTCATACAGTAGGCTACTGGACTAATACTTCTGGATTTTCACTTATACCTCCCGAGGATCATCAAAGCCATTCGA AGGTAAATAGGAAGCTTGAGAATATCACCTGGCCAGGTGGGAAGACGGAGAAACCTCGTGGTTGGGTGATCGCTAACAACGAAAAGCCGTTGCGGATTGG AGTGCCTTACCGTACAAGTTTTCTTGATTTTGTTAGTGAAGTGCCTAATAGCCACAAAATCGAAGGATACTGTATAGATGTGTTCATGGAAGCAACGAAA TTAGTACCATATGATGTTCCTTACACATTTGTTCCGTTCGGGGATGGCCATTCCAATCCCAACTACGACGACCTTGTAGGCCAAGTTGCAGCCAATGTGT ATGATGCAGCGGTTGGCGACATAGCGATTGTGACAAGCCGGACAAAGTTAGTGGATTTCTCTCAACCTTATGTAGCTACTGGGCTTGTGATTGTGGCTCC AGTCGAAAACTCGAAAGATAGTGCATGGGTATTTCTCAAGCCATTCACCTTGGAGTTGTGGTGTGTTACTGCAGCTTCATTTCTTATCGTTGCAGTGGTG ATCTGGTTACTCGAGCATCGCGTGAACGATGATTTCAGAGGCCCTCCTAAACGCCAGCTCGTTACGATGCTTATGTTCAGCTTCTCAACTCTGTTCAAGA CGAATCAGGAAACTACAAGAAGTTCACTTGCAAAGATGGTCATGCTAGTATGGCTTTTCTTATTGATGGTGATAAGTGCAAGCTACACGGCTAGTTTGAC TTCCATCCTAACAGTTGAGCAGCTTTCGTCCCCAATTACCGGAATCGAAAGTTTGGTCGCAAGTAACTTTCCGATCGGATACCAAGAAGGATCATTTGCT TATGATTATCTAACAGAATGTCTCCACATACCTACATCAAGGCTCAAACCTCTACGTAACGCTGAAGAGTACGAGGCAGCATTGAGGAAAGGGGCTGGTG ACGGAGGAGCCGCAGCAATCGTAGACGAGCTTCCATACGTAGAAGTGTTCCTTGCAAATCAAACGGATTTCGGAATCATCGGCCAAGCATTCACCAGGGC TGGATGGGGCTTTGCCTTTCAGAAAGAGTCGCCTCTTGCCATCGACATTTCCACAGCAATCCTGAAGCTTTCGGAGAACGGAGAGCTTCAGAAGATTCAT GATAGGTGGTTCTGTAAGAAGGGATGCCCTGAAGAGCGAAAGAAAAAGGGAGAGTCTAACCAGCTTCGTTTGATTAGCTTCTGGGGTCTATATCTTCTGT GTGGCATTGTCACTCTAACTGCATTGCTAATCTACATCATACGAATGATTCATCAATTCGCCATTCACAAACATAGACAGAATGTTTCTCCGTTAGAAGT ACCGACAACCAGTACCGGCTGTTTCCAGGTAGCCAACAACTTTTTCAACTTCATTGATGAGAAAGAACGAAGCCATCGAGATATCGTTTAA
AA sequence Show only first row Show all	>Lus10027170 pacid=23145463 polypeptide=Lus10027170 locus=Lus10027170.g ID=Lus10027170.BGIv1.0 annot-version=v1.0 MKLPSVKAVVFVFIVYAEFAFCQQRPQVVNIGAVFMFESVIGRAAMPAINAAIADVNKDKTVLNGTRLNLMMEDSNCSVFFGSVVALRMIERQVVSLIGP LSSGIAHMVSEVANGLQVPLISFAATDPTLSALQFPYFVRTTLSDSYQMAALADLVEFHEWKEVIVIFTDNDHGRNGVSALEDQLNKRMIRVASKMRLRA RFNDSDVMDVLNSTKLLGPRVYIVHSYQDPDLRIFKMAQELEMMTANFVWLATDWLATTLDSFTPSQRRSSLLSLVQGVVGLRQHTPESTRKKDFVSRWK DMQRKGLVNTELNAYGFQAYDTVWLLAYAIDKLINGKANNFTFSSRDRLLDDTQKFQLGHLKVFNGGADLLKIILQSDFTGLSGRVRFNADRNVLDRGYE VVNVNNMSIHTVGYWTNTSGFSLIPPEDHQSHSKVNRKLENITWPGGKTEKPRGWVIANNEKPLRIGVPYRTSFLDFVSEVPNSHKIEGYCIDVFMEATK LVPYDVPYTFVPFGDGHSNPNYDDLVGQVAANVYDAAVGDIAIVTSRTKLVDFSQPYVATGLVIVAPVENSKDSAWVFLKPFTLELWCVTAASFLIVAVV IWLLEHRVNDDFRGPPKRQLVTMLMFSFSTLFKTNQETTRSSLAKMVMLVWLFLLMVISASYTASLTSILTVEQLSSPITGIESLVASNFPIGYQEGSFA YDYLTECLHIPTSRLKPLRNAEEYEAALRKGAGDGGAAAIVDELPYVEVFLANQTDFGIIGQAFTRAGWGFAFQKESPLAIDISTAILKLSENGELQKIH DRWFCKKGCPEERKKKGESNQLRLISFWGLYLLCGIVTLTALLIYIIRMIHQFAIHKHRQNVSPLEVPTTSTGCFQVANNFFNFIDEKERSHRDIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10027170 [exp]	0	1
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10015414 [exp]	4.0	0.8208
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10037788 [exp]	4.4	0.8790
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10035115 [exp]	13.0	0.8169
AT1G78560			Sodium Bile acid symporter fam...		Lus10035803 [exp]	13.6	0.7598
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10031816 [exp]	21.8	0.8492
AT5G10010			unknown protein		Lus10005778 [exp]	24.7	0.8370
AT1G61670			Lung seven transmembrane recep...		Lus10030521 [exp]	29.4	0.7068
AT3G49810			ARM repeat superfamily protein...		Lus10010598 [exp]	31.2	0.7952
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10042358 [exp]	35.9	0.7768
AT1G80530			Major facilitator superfamily ...		Lus10001678 [exp]	43.0	0.7974

Compare expression of checked genes

Lus10027170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.