Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05200 1192 / 0 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT2G32390 1115 / 0 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT1G42540 949 / 0 ATGLR3.3 glutamate receptor 3.3 (.1) AT4G35290 925 / 0 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G17260 911 / 0 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT3G51480 909 / 0 ATGLR3.6 glutamate receptor 3.6 (.1) AT2G32400 759 / 0 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT2G29100 470 / 6e-151 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29120 467 / 1e-149 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 461 / 2e-147 ATGLR2.8 glutamate receptor 2.8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039671 [exp] 1760 / 0 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10012245 [exp] 1011 / 0 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10035980 [exp] 907 / 0 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10031560 [exp] 887 / 0 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10015118 [exp] 863 / 0 AT2G32400 987 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10016031 [exp] 862 / 0 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10039672 [exp] 858 / 0 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10027170 [exp] 850 / 0 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10026553 [exp] 827 / 0 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G152200 [exp] 1340 / 0 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.002G230000 [exp] 1321 / 0 AT1G05200 1198 / 0.0 glutamate receptor 3.4 (.1.2) Potri.005G253800 [exp] 1004 / 0 AT1G42540 1180 / 0.0 glutamate receptor 3.3 (.1) Potri.005G102700 [exp] 979 / 0 AT3G51480 1169 / 0.0 glutamate receptor 3.6 (.1) Potri.002G007400 [exp] 973 / 0 AT1G42540 1178 / 0.0 glutamate receptor 3.3 (.1) Potri.009G168300 [exp] 951 / 0 AT4G35290 1127 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Potri.005G102600 [exp] 904 / 0 AT3G51480 1012 / 0.0 glutamate receptor 3.6 (.1) Potri.002G229900 [exp] 886 / 0 AT2G32400 955 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Potri.018G012600 [exp] 540 / 3e-177 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012900 [exp] 534 / 5e-175 AT2G29120 910 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10027171 pacid=23145352 polypeptide=Lus10027171 locus=Lus10027171.g ID=Lus10027171.BGIv1.0 annot-version=v1.0 ATGGCAAGCAATCTGCTTCTGTTGCTGATTCTTGCCATTTCCTTGCTGCAAATATTACAAGTTTTGGGTCAGGCAGCAGATGGAAATTCCACTGCTTCTG CAAGGCCAAAGATGGTGAACATAGGAGCCCTTTTCACTTTTGATTCTGTGATTGGAAGAGCAGCCAAGCCTGCAATTGCTGCTGCAGTTAATGATGTCAA TTCTGATTCCACCATCCTGTCCGGTACCAAGTTGGAGATTATTTTCCATGATACAAATTGCAGTGGCTTCCTGGGAACTGTGGAAGCTTTGCAGCTGATG GAAAATGACGTGGTGGCAGTAATTGGACCACAATCTTCAGGCATAGCTCATGTGATCTCCCATGTAGTGAATGAGCTTCAAGTTCCCTTACTGTCGTTCG CAGCCACGGATCCGACACTTGCAGCACTCCAGTATCCTTATTTCCTGCGGACTACACAGAGTGACTACTTCCAGATGTATGCAATTGCTGATATGGTCTC ATACTTTGGCTGGAGGGAAGTCATTGCCATTTTTGTTGATGATGACTATGGCAGAGGTGGGGTTTCCGTGTTAGGCGATGCCTTGGCGAAGAAGCGTGCC AAGATCTCGTACAAGGCCGCCATTTCGCCAGGAGGCGGCCGGAACTCGATCAAGGATACATTGGTTGAAGTGAACTTGTTGGAATCCAGGGTTTACATTG TTCATGTCAATCCTGATACAGGGCTTTCCATATTCTCAGAAGCCAAGAACCTTGGTATGATGTCCAAGAGCTATGTCTGGATCACCACTGACTGGCTTGC TTCCGTCTTGGACTCGAGGGTCCCCACTGATCAAGATAATTCGGACATGATGAACCTTCTCCAAGGTGTTGTATCACTCAGGCACCACACACCGGACACT GATATGAAGAAGAAGTTCATGTCTAGGTGGAATGGTCTCAAGTATAAGAACCCGGGACCCGGTATGTTCAACTCCTACGCACTCTACGCTTACGATTCCG TATGGCTAGCTGCAACAGCCCTCGAATCTTTCCTAACCAGCAATGGAACCGTGTCCTACTCCAACGATCCAAAGTTGAAAGACACAAACACAAGCACATT GCACTTGTCGTCCCTCCGGGTCTTCAACGAAGGCCAGCAGTACCTCCAGACACTACTGAAGACCAACTTCACCGGTCTTAGTGGTCACATTCGGTTCGAT CACGACAAGAACTTCATCCACCCTGCCTACGATGTCCTCAACATCGGAGGGAACTCGTTCCGCAGGGTGGGATACTGGTCGAACCACTCCGGTCTTTCCA TAGTTGATCCTGAGAATCTTTATAGTGGGAAGCCTGTGAATGCTTCTTCCACCATTAGTAGTAATGAACACCTCTACAGCATCATATGGCCGGGGGAAAC CTCCGAAACTCCGAGAGGCTGGGTGTTCCCCAACAATGGGAAGCCACTGAGGATTGCTGTCCCTGATAGAGTGAGTTACTTGTCTTTTGTTGCCAAGGAT AAGAACCCTCCTGGTGTTCGAGGATACTGCATTGATGTCTTTGAAGCTGCCATCAACTTGCTGCCATATCCTGTTCCAAGGACTTACATGTTGTATGGTG ATGACAAGAGAAACCCTTCTTACAACAACATTGTCAATGCAGTTGCCCTCAATGAATATGATGCAGCAGTGGGAGATGTGACAATAGTGACAAACAGAAC AAAGATTGTGGATTTCACTCAGCCATACATGGAATCAGGACTGGTTGTGGTAGCTCCAGTAAAGCAAGTGAAATCCAGTCCATGGGCTTTCCTCAAGCCA TTCACTATCCAGATGTGGTGTGTAACTGGTGCTTTCTTCCTCTTCGTCGGAGCTGTTGTCTGGATCCTCGAGCATCGAATCAACCACGAGTTCCGGGGAC CTCCGAGACAGCAATACAAGACCTATAAAAGGTTTAGCTTCTCCACAATGTTCTTCTCCCACAGGGAAAACACGGTGAGCACATTGGGGCGTCTAGTGCT GATCATATGGCTGTTTGTCGTCCTGATCATCAATTCGAGCTACACGGCCAGCTTGACATCGATCCTGACCGTTCAGCAGCTGTCATCGAGGATTGAAGGG ATCGATACATTGATTGCGAGTACCGAACCGATAGGAGTTCAGGACGGGTCGTTTGCGTGGAACTACTTGGTTGACGAGCTCAACATTGCATCTTCCAGGC TTGTGACGCTGAAAACTCAGGAAGACTACACGGCGGCGCTTCTGAAAGGGCCGAAAGGCGGAGGAGTGGCGGCCATTGTCGACGAGCTTCCGTACGTGGA GATGTTCTTGTCGAACGCTAACTGCCAGTTCAAGACCGTTGGACAGGAGTTCACCAAGAGCGGCTGGGGATTTGCATTTCAGAGGGACTCTCCGTTAGCA GTCGACCTATCGACGGCGATCCTCCAGCTATCGGAGAACGGAGACCTGCAGAAGATCCACAACAAGTGGCTCCTCCACAGCGAGTGCGCCGACCAGCTCA ACCCGATCGACGAGAATCGCCTCTCCCTCAGCAGCTTTTGGGGGCTTTTCCTGATCTGCGGCCTCTCCTGCCTATTCGCTCTCTTAATCTTCTCCTGCCG CGTCTACGGACAGTTCAGCAGGTTCGCCCCCGACCGCGATGACGGCGGCGGAGGAGACGCTGACACGGAGGACATTCGGCCGGCGCCGGGGACGAGGCCG CGGCGGTCACTGAGGACCACGAGCTTTAAGGACATAATTGAATTTGTAGATAAAAAGGAGGCGGAGATTAAGGAGATACTCAAGCGGAAGCACAGCCACC ATCACGGCAGCAGCCCGAGCACCGACGGCCAGACTACCTCGCCGGCGTGA
AA sequence Show only first row Show all	>Lus10027171 pacid=23145352 polypeptide=Lus10027171 locus=Lus10027171.g ID=Lus10027171.BGIv1.0 annot-version=v1.0 MASNLLLLLILAISLLQILQVLGQAADGNSTASARPKMVNIGALFTFDSVIGRAAKPAIAAAVNDVNSDSTILSGTKLEIIFHDTNCSGFLGTVEALQLM ENDVVAVIGPQSSGIAHVISHVVNELQVPLLSFAATDPTLAALQYPYFLRTTQSDYFQMYAIADMVSYFGWREVIAIFVDDDYGRGGVSVLGDALAKKRA KISYKAAISPGGGRNSIKDTLVEVNLLESRVYIVHVNPDTGLSIFSEAKNLGMMSKSYVWITTDWLASVLDSRVPTDQDNSDMMNLLQGVVSLRHHTPDT DMKKKFMSRWNGLKYKNPGPGMFNSYALYAYDSVWLAATALESFLTSNGTVSYSNDPKLKDTNTSTLHLSSLRVFNEGQQYLQTLLKTNFTGLSGHIRFD HDKNFIHPAYDVLNIGGNSFRRVGYWSNHSGLSIVDPENLYSGKPVNASSTISSNEHLYSIIWPGETSETPRGWVFPNNGKPLRIAVPDRVSYLSFVAKD KNPPGVRGYCIDVFEAAINLLPYPVPRTYMLYGDDKRNPSYNNIVNAVALNEYDAAVGDVTIVTNRTKIVDFTQPYMESGLVVVAPVKQVKSSPWAFLKP FTIQMWCVTGAFFLFVGAVVWILEHRINHEFRGPPRQQYKTYKRFSFSTMFFSHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSRIEG IDTLIASTEPIGVQDGSFAWNYLVDELNIASSRLVTLKTQEDYTAALLKGPKGGGVAAIVDELPYVEMFLSNANCQFKTVGQEFTKSGWGFAFQRDSPLA VDLSTAILQLSENGDLQKIHNKWLLHSECADQLNPIDENRLSLSSFWGLFLICGLSCLFALLIFSCRVYGQFSRFAPDRDDGGGGDADTEDIRPAPGTRP RRSLRTTSFKDIIEFVDKKEAEIKEILKRKHSHHHGSSPSTDGQTTSPA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10027171 [exp]	0	1
AT4G16360			5'-AMP-activated protein kinas...		Lus10006390 [exp]	1.7	0.8700
AT1G62870			unknown protein		Lus10004325 [exp]	2.8	0.8781
AT2G40130			Double Clp-N motif-containing ...		Lus10040206 [exp]	3.0	0.8831
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10011510 [exp]	4.9	0.8666
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Lus10024271 [exp]	9.0	0.8551
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Lus10017641 [exp]	9.5	0.8648
AT3G61120	MADS	AGL13	AGAMOUS-like 13 (.1)		Lus10041548 [exp]	10.1	0.8285
AT5G05200			Protein kinase superfamily pro...		Lus10012865 [exp]	11.8	0.8641
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10014493 [exp]	12.0	0.8510
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003622 [exp]	12.3	0.8635

Compare expression of checked genes

Lus10027171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.