Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21700 305 / 2e-104 ATSGP2 Ras-related small GTP-binding family protein (.1.2.3) AT5G54840 245 / 1e-80 ATSGP1 Ras-related small GTP-binding family protein (.1.2) AT5G03530 72 / 7e-15 ATRABALPHA, AtRABC2a, AtRab18B ,ATRAB ALPHA ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) AT2G44610 67 / 5e-13 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT5G59150 62 / 2e-11 ATRAB-A2D, AtRABA2d ARABIDOPSIS RAB GTPASE HOMOLOG A2D, RAB GTPase homolog A2D (.1) AT3G09910 62 / 2e-11 AtRab18C, AtRABC2b RAB GTPase homolog C2B (.1.2.3) AT1G07410 62 / 3e-11 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT3G46830 59 / 2e-10 ATRAB-A2C, AtRab11A, AtRABA2c ARABIDOPSIS RAB GTPASE HOMOLOG A2C, RAB GTPase homolog A2C (.1) AT4G39890 59 / 2e-10 AtRABH1c RAB GTPase homolog H1C (.1) AT5G47520 59 / 3e-10 AtRABA5a RAB GTPase homolog A5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039670 [exp] 476 / 7e-172 AT3G21700 325 / 3e-112 Ras-related small GTP-binding family protein (.1.2.3) Lus10031559 [exp] 378 / 3e-133 AT3G21700 340 / 5e-118 Ras-related small GTP-binding family protein (.1.2.3) Lus10015119 [exp] 369 / 2e-129 AT3G21700 335 / 7e-116 Ras-related small GTP-binding family protein (.1.2.3) Lus10040044 [exp] 262 / 2e-87 AT5G54840 331 / 1e-114 Ras-related small GTP-binding family protein (.1.2) Lus10019615 [exp] 260 / 1e-86 AT5G54840 330 / 6e-114 Ras-related small GTP-binding family protein (.1.2) Lus10014409 [exp] 69 / 1e-13 AT5G03530 351 / 8e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10023910 [exp] 67 / 5e-13 AT5G03530 353 / 2e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10019501 [exp] 65 / 2e-12 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10043349 [exp] 65 / 2e-12 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G152100 [exp] 341 / 1e-118 AT3G21700 315 / 2e-108 Ras-related small GTP-binding family protein (.1.2.3) Potri.001G420700 [exp] 289 / 4e-98 AT5G54840 363 / 2e-127 Ras-related small GTP-binding family protein (.1.2) Potri.011G136300 [exp] 288 / 1e-97 AT5G54840 370 / 5e-130 Ras-related small GTP-binding family protein (.1.2) Potri.006G121400 [exp] 68 / 3e-13 AT5G03530 335 / 2e-118 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.010G229600 [exp] 67 / 5e-13 AT5G03530 311 / 7e-109 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.002G135500 [exp] 66 / 7e-13 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.016G097800 [exp] 66 / 8e-13 AT5G03530 349 / 5e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.003G086700 [exp] 66 / 1e-12 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.008G032000 [exp] 62 / 3e-11 AT5G03530 290 / 1e-100 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.016G000400 [exp] 62 / 4e-11 AT1G07410 380 / 4e-136 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08477 [flax] [poplar] Roc Ras of Complex, Roc, domain of DAPkinase
Representative CDS sequence Show only first row Show all	>Lus10027172 pacid=23145562 polypeptide=Lus10027172 locus=Lus10027172.g ID=Lus10027172.BGIv1.0 annot-version=v1.0 ATGGGCCGATCCAAGTCCAGCCCTCGCCGGAAAGCCCAATGCCCTCTCACGATCCTCCGCCGCTGCATTCTCCAGGGGTGGAACCGAATCCTCATTTACT CCGTCGGAAAGCCGATCAAGTACAGAATTCTTTCCCATTCCGACGTCGGAACCACCTCATTGCCTCTTCCTTCCGCCGCCGCCACCGGAGAAATTCCGCC TCCGCCGCTGCAGCCTTTACCAGCTGCGCTTCGTAACGGCGTGGCCGGCGAGTCGGATTTGGTTTCTTTGAAGATTAGCCTCCTGGGTGATAGCCAGATT GGGAAAACAAGCTTTTTGGCGAAGTACGTCGGCGGCGATGAGGCGGCGGCAGAAGAAGGAGGAGGAGGAGGAAAAGATGGGCTGAATTTGATGGACAAAG TATTGAAAATCGGAGGCGCACGGATTTCCTACAGTCTCTGGGAATTCGACGGCGGAGAGCAGTCACGGGAGCTGATTCCGGTGGCCTGCAAGGACTCAGT GGCGATTCTCATCATGTTCGATCTCACAAGTCGGGTCACTCTTAACGGAGTGATGAGATGGTACCAAGAAGCAAGGAAATGGAACCAGACAGCAATACCG ATTTTGATCGGAACGAAGTTCGACGACTTCATCCAGCTTCCCATTGATATGCAATGGACAATTGCCAGCCAGGCGAGAGCAATTGCAAAGGCGCTGAACG CGACACTGTTCTTCTCCAGCGCGACATACAACATCAATGTGAATAAGATCTTCAAGTTCTTAACAGCCAAGCTCTTTGATCTGCCGTGGACGTTGGAGCG GAACCTTACAATCGGAGAGCCCATCATCGATTTCTGA
AA sequence Show only first row Show all	>Lus10027172 pacid=23145562 polypeptide=Lus10027172 locus=Lus10027172.g ID=Lus10027172.BGIv1.0 annot-version=v1.0 MGRSKSSPRRKAQCPLTILRRCILQGWNRILIYSVGKPIKYRILSHSDVGTTSLPLPSAAATGEIPPPPLQPLPAALRNGVAGESDLVSLKISLLGDSQI GKTSFLAKYVGGDEAAAEEGGGGGKDGLNLMDKVLKIGGARISYSLWEFDGGEQSRELIPVACKDSVAILIMFDLTSRVTLNGVMRWYQEARKWNQTAIP ILIGTKFDDFIQLPIDMQWTIASQARAIAKALNATLFFSSATYNINVNKIFKFLTAKLFDLPWTLERNLTIGEPIIDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10027172 [exp]	0	1
AT1G67570			Protein of unknown function (D...		Lus10006430 [exp]	6.0	0.7946
AT3G05010			Protein of unknown function, t...		Lus10033835 [exp]	7.4	0.8054
AT3G29270			RING/U-box superfamily protein...		Lus10030699 [exp]	10.0	0.8013
					Lus10022348 [exp]	17.0	0.7663
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10017470 [exp]	23.9	0.7415
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10019411 [exp]	45.5	0.7850
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10039872 [exp]	48.0	0.6950
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10006054 [exp]	48.8	0.7664
AT1G07040			unknown protein		Lus10030795 [exp]	57.5	0.7814
AT4G31130			Protein of unknown function (D...		Lus10030038 [exp]	70.3	0.6899

Compare expression of checked genes

Lus10027172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.