Plant FIBer expression Database

Lus10027174 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G32380 173 / 9e-56 Transmembrane protein 97, predicted (.1)
AT1G05210 162 / 2e-51 Transmembrane protein 97, predicted (.1)
AT1G05220 146 / 2e-45 Transmembrane protein 97, predicted (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039668
[exp]
288 / 4e-101 AT2G32380 194 / 5e-64 Transmembrane protein 97, predicted (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G117800
[exp]
196 / 9e-65 AT2G32380 173 / 9e-56 Transmembrane protein 97, predicted (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence
>Lus10027174 pacid=23145421 polypeptide=Lus10027174 locus=Lus10027174.g ID=Lus10027174.BGIv1.0 annot-version=v1.0
ATGGGCGCGTTCGTGAAGCTGGTGGATTTCCTACTCTTCTTCGTCTTCCTCGTGATCGCTATAGCCGCTCCTCTGCTCGACGCGCAGACGTGCCTCCCTC
GCACCTACTTCCCTGATGCGTTGGTCGATCTGCATGAATGGTACGGCAAAGAGTTCGGAGACTATCTCACCGTCGAGAAGCCGCACTTCTTCGTCGGATT
GGTCTGGCTGGAGCTCTTCTTCCAGTGGCCGCTCGCCATCCTCAACCTGTATGCGATCTTGGCCTCCAAGCCGTGGTTCAACACCTCTTGCTTGATCTAC
GGCGTCTCCCTCATCTCCACCATGGTTCCGATTCTATCAGACATGGTGCTGTCTGAGAAAGCATCTGAGAAGCTGATGATGGTCTACGCCCCATTCCTTG
GAGCTGGTGTGGTCGCAATGCTGAGAGGGTTCGTCCCATATTCCGGGAAGAGCAGTTCCGGAGCCCCGAAGAGGCCAGCTTTCGGCAGGAAGAAGAGGGT
TTGA
AA sequence
>Lus10027174 pacid=23145421 polypeptide=Lus10027174 locus=Lus10027174.g ID=Lus10027174.BGIv1.0 annot-version=v1.0
MGAFVKLVDFLLFFVFLVIAIAAPLLDAQTCLPRTYFPDALVDLHEWYGKEFGDYLTVEKPHFFVGLVWLELFFQWPLAILNLYAILASKPWFNTSCLIY
GVSLISTMVPILSDMVLSEKASEKLMMVYAPFLGAGVVAMLRGFVPYSGKSSSGAPKRPAFGRKKRV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G32380 Transmembrane protein 97, pred... Lus10027174
[exp]
0 1
AT1G61790 Oligosaccharyltransferase comp... Lus10007647
[exp]
1.7 0.9615
AT3G08640 Protein of unknown function (D... Lus10003242
[exp]
2.0 0.9537
AT3G28720 unknown protein Lus10015362
[exp]
2.4 0.9356
AT4G35630 PSAT phosphoserine aminotransferase... Lus10005333
[exp]
2.8 0.9398
AT2G36530 ENO2, LOS2 LOW EXPRESSION OF OSMOTICALLY ... Lus10002844
[exp]
4.5 0.9388
AT5G08680 ATP synthase alpha/beta family... Lus10035263
[exp]
4.6 0.9477
AT3G59390 unknown protein Lus10004383
[exp]
6.5 0.9089
AT2G16800 high-affinity nickel-transport... Lus10027851
[exp]
6.6 0.9088
AT5G41670 6-phosphogluconate dehydrogena... Lus10032341
[exp]
6.9 0.9230
AT5G43330 c-NAD-MDH2 cytosolic-NAD-dependent malate... Lus10021870
[exp]
7.0 0.9320

Lus10027174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.