Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05230 1056 / 0 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT4G21750 1031 / 0 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G04890 1029 / 0 HD PDF2 protodermal factor 2 (.1) AT4G00730 697 / 0 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT2G32370 686 / 0 HD HDG3 homeodomain GLABROUS 3 (.1) AT1G73360 603 / 0 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 580 / 0 HD HDG12 homeodomain GLABROUS 12 (.1) AT5G46880 565 / 0 HD HDG5, HB-7 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1) AT5G52170 542 / 0 HD HDG7 homeodomain GLABROUS 7 (.1) AT1G79840 522 / 1e-174 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039667 [exp] 1343 / 0 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10006765 [exp] 999 / 0 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 995 / 0 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10007650 [exp] 982 / 0 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10018359 [exp] 717 / 0 AT4G04890 805 / 0.0 protodermal factor 2 (.1) Lus10031321 [exp] 689 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10036567 [exp] 645 / 0 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10027437 [exp] 564 / 0 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 558 / 0 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G152000 [exp] 1166 / 0 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G230200 [exp] 1164 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 1029 / 0 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 1008 / 0 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 751 / 0 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 749 / 0 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G034100 [exp] 677 / 0 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G038500 [exp] 659 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.015G141800 [exp] 627 / 0 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 623 / 0 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10027175 pacid=23145533 polypeptide=Lus10027175 locus=Lus10027175.g ID=Lus10027175.BGIv1.0 annot-version=v1.0 ATGCCAGCCGGAGTGATGGTTCCGGCGAGAAACATGGCATCATCGGCGGCGATTCTTAGGAGTAACGGCGGCACCGGCACCAGTAGTAGCTCTAGCGTTG TTGGCCTTGGCGGGTTCGGCTCATCCACCACTCTTCCTATTCTTGGCCAGGGGAGCATGATGGACGACGTCGACGGGATGGTCGGTGGCGGCGGAGGGCA CCACCACCACCACCAGCTTCAGTATTTACACCTAGACATGATGACCCACCACGCCACGCCGGAGAGCAACGACTTCCCCGGCGGAGGAGGAGAGTTTGAC ATATCCGGCAACACAAAGTCCGGCGGGAGCGACAACCAAGACGGCGGCGGCGGATCTGGGGACGACCAGGAGCACCAGCAGCAACCGCCGAACAAGAAGA AGCGGTACCACCGCCATACCCAGCACCAGATCCAGGAAATGGAAGCATTTTTCAAGGAATGTCCACACCCAGATGACAAGCAGAGAAAAGAGCTTAGCAG GGAGCTAGGGCTCGAGCCTTTGCAAGTCAAGTTCTGGTTCCAGAACAAACGCACCCAGATGAAGACTCAACATGAGAGACTTGAGAACAATCAGCTGAGA TCGGAGAACGACAAGCTTAGAGCCGATAACATGAGGTACCGTGAAGCCCTAACCAACACCTCCTGCCCGAACTGTGGTGGGCCCACCGCAGTCGGTGAGA TGTCCTTCGACGAACACCATCTCAGGCTCGAGAATGCCCGACTTCGAGAGGAGATTGATCGGATATCAGGGATAGCTGCGAAGTACGTAGGGAAGCCGGT GGTGAACTTCCCACTGCTGTCATCACCAATGGCACCACGTCCTGTCGAGCTACGGGTTGGGAATTTCGGAGGAGGTGAACATCAGCCTGCTGCCGCGGAC GGAGGAGGAGGTGTGGATATGTATGGAGGTGGAGCAGGGGACTTGTTGAGGTCAATAAGTGGGCCCGCGGAGGCTGACAAGCCGATCATAATCGAGCTAG CTGTTGCAGCCATGGAAGAGGTTGTTAGGATGGCTCAAATGGGTGAGCCCTTATGGATGACGAATGGTTTGGATGGTTCGGACCCGGTTTTGAACGAGGA TGAGTACATTAGGACTTTCCCTCGTGGCATCGGACCCAAACCTAATGGGTTCAAGTCCGAGGCCTCGAGGGAGACCGCCGTTGTCATCATGAACCACGTC AACCTCGTTGAGTACCTCATGGACGTGAACCAGTGGGCAGGTTTGTTCTCCGGGATAGTGTCTAGGGCAATGACATTGGAAGTGTTGTCAACGGGAGTTG CGGGGAACTACAATGGTGCATTACAAGTGATGACAGCTGAACTCCAACTCCCGACTCCCCTTGTCCCCACGAGGGAGAGCTACTTTGCGAGGTACTGTAA GCAACACTCCGACGGGACTTGGGCGGTGGTCGACGTTTCCTTGGACGACTTACGGCCGAGTCCGGTGGCAAGGTGCCGGAAGAGGCCTTCCGGTTGCTTG ATTCAAGAAATGCCCAATGGTTACTCCAAGGTGACGTGGATTGAACACGTGGAAGTGGACGACAGAGGGGTCCACAATCTCTACAAGCAGATCGTCGGCT CCGGCCACGCCTTCGGAGCAAAGCGGTGGGTGGCGACGCTGGACCGGCAGTGCGAGCGGCTGGCAAGCGCCATGGCTACAAACATCCCCACTAATGACGT TGGAGTGATAACGAACCAAGAAGGGCGGAAGAGCATGATGAAGCTAGCAGAGAGGATGGTGGTCAGCTTCTGCGCCGGAGTCAGCGCTTCTACAGCTCAC ACGTGGACGACTCTCTCCGGTACCGGAGCTGACGACGTCCGGGTCATGACCCGGAAGAGCATCGACGATCCGGGTCGTCCTCCCGGTATCGTGCTTAGTG CCGCGACGTCATTCTGGATCCCTGTCGCGCCCAAACGTGTCTTTGACTTTCTCCGTGACGAAAACTCTCGTAGCGAGTGGGATATTTTGTCGAACGGAGG GGCTGTACAAGAAAGGGCGCAAATAGCTAACGGCCGTGACACCGGCAACTGCGTATCTCTTCTTCGCGTTAACAGTGCGAATTCGAGCCAGGGGAACATG CTGATACTGCAAGAGAGCTGCACGGATCAGACAGCGTCGTTCGTGATATATGCTCCGGTGGACATAGTGGCGATGAATGTGGTGCTCAACGGTGGGGATC CGGATTATGTTGCTCTGCTTCCTTCAGGGTTCGCGATTCTTCCTGACGGCAACGCTGGTGGTGAAGCTGAAGGCGGCGGAGACGGAGGAGCAGGAGGAGG AGGCGGTTCACTTCTAACTGTTGCATTTCAGATATTGGTGGATTCAGTTCCGACGGCGAAGTTATCTCTTGGATCAGTTGCTACTGTTAACAGTCTCATT GCTTGCACCGTTGAGAGGATCAAGGCTGCTCTGTCCTGTGAGAATGCCGCATCTGCTAATCTTTGA
AA sequence Show only first row Show all	>Lus10027175 pacid=23145533 polypeptide=Lus10027175 locus=Lus10027175.g ID=Lus10027175.BGIv1.0 annot-version=v1.0 MPAGVMVPARNMASSAAILRSNGGTGTSSSSSVVGLGGFGSSTTLPILGQGSMMDDVDGMVGGGGGHHHHHQLQYLHLDMMTHHATPESNDFPGGGGEFD ISGNTKSGGSDNQDGGGGSGDDQEHQQQPPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERLENNQLR SENDKLRADNMRYREALTNTSCPNCGGPTAVGEMSFDEHHLRLENARLREEIDRISGIAAKYVGKPVVNFPLLSSPMAPRPVELRVGNFGGGEHQPAAAD GGGGVDMYGGGAGDLLRSISGPAEADKPIIIELAVAAMEEVVRMAQMGEPLWMTNGLDGSDPVLNEDEYIRTFPRGIGPKPNGFKSEASRETAVVIMNHV NLVEYLMDVNQWAGLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFARYCKQHSDGTWAVVDVSLDDLRPSPVARCRKRPSGCL IQEMPNGYSKVTWIEHVEVDDRGVHNLYKQIVGSGHAFGAKRWVATLDRQCERLASAMATNIPTNDVGVITNQEGRKSMMKLAERMVVSFCAGVSASTAH TWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWIPVAPKRVFDFLRDENSRSEWDILSNGGAVQERAQIANGRDTGNCVSLLRVNSANSSQGNM LILQESCTDQTASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGNAGGEAEGGGDGGAGGGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLI ACTVERIKAALSCENAASANL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10027175 [exp]	0	1
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Lus10012896 [exp]	1.0	0.9118
AT1G55260			Bifunctional inhibitor/lipid-t...		Lus10042449 [exp]	1.7	0.8873
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10039667 [exp]	3.5	0.9066
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10034763 [exp]	6.0	0.8387
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018351 [exp]	6.0	0.8701
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10004770 [exp]	9.5	0.8584
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10017827 [exp]	9.5	0.8444
AT3G29030		ATEXP5, ATHEXPA...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10033011 [exp]	11.0	0.8473
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10041362 [exp]	12.2	0.8431
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034540 [exp]	12.4	0.8406

Compare expression of checked genes

Lus10027175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.